Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.2e-112 409.1 216 100.0
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 2.6e-110 402.1 216 98.1
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 4.2e-108 394.8 216 95.8
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.0e-102 375.9 219 90.4
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 4.1e-95 351.7 218 88.1
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 5.4e-79 298.1 236 74.6
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 6.1e-75 284.6 236 72.9
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 5.0e-69 265.0 237 67.5
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.6e-67 260.0 247 64.4
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 3.7e-56 222.2 229 59.8
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.4e-55 220.3 221 59.3
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 4.6e-54 215.3 222 57.2
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 6.6e-53 211.5 236 54.7
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 1.1e-50 204.1 244 51.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 4.4e-49 198.7 280 48.9
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.7e-48 196.8 245 50.6
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 3.8e-48 195.7 214 55.6
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 9.2e-47 191.0 230 52.6
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 4.6e-46 188.7 230 53.5
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.6e-46 188.7 255 49.8
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.0e-45 186.0 230 51.3
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 8.6e-45 184.5 234 48.7
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.9e-44 183.3 225 52.0
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 3.3e-44 182.6 230 52.6
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 4.3e-44 182.2 239 47.7
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 9.6e-44 181.0 227 48.9
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.1e-43 179.9 212 51.4
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.8e-43 179.5 207 55.6
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.2e-40 169.9 220 49.1
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.9e-40 169.5 204 53.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.1e-39 167.5 191 51.8
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 7.1e-39 164.9 224 46.0
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.2e-38 164.1 214 46.3
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.6e-38 163.7 232 47.0
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.5e-38 162.5 172 54.7
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.0e-37 161.0 223 48.9
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.3e-37 160.6 223 46.6
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 3.0e-37 159.5 223 48.9
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 3.0e-37 159.5 220 48.2
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 6.6e-37 158.3 232 48.3
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.1e-36 157.5 213 49.8
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.5e-36 156.4 225 48.0
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.6e-36 155.2 238 44.1
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 7.3e-36 154.8 235 43.4
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 7.3e-36 154.8 150 56.0
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 7.3e-36 154.8 217 48.4
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 9.6e-36 154.5 247 43.3
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 9.6e-36 154.5 227 45.4
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.6e-36 154.5 227 45.4
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.3e-35 154.1 238 45.0
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.6e-35 153.7 216 46.8
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 3.6e-35 152.5 217 47.5
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 3.6e-35 152.5 226 44.2
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 6.2e-35 151.8 265 41.5
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.1e-34 151.0 216 45.8
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 1.8e-34 150.2 231 45.0
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 6.9e-34 148.3 226 45.1
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 2.0e-33 146.7 216 47.2
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.0e-33 146.7 228 46.1
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 2.0e-33 146.7 213 45.1
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 4.5e-33 145.6 226 44.7
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 7.6e-33 144.8 243 42.4
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.3e-32 144.1 227 42.7
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.3e-32 144.1 176 48.9
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.3e-32 144.1 210 47.1
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 2.9e-32 142.9 227 42.3
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 4.9e-32 142.1 230 45.2
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.1e-31 141.0 215 43.3
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.1e-31 141.0 240 41.7
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 4.2e-31 139.0 231 42.9
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 7.1e-31 138.3 224 42.9
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 1.2e-30 137.5 229 45.0
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.0e-29 132.9 211 43.1
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 5.1e-29 132.1 215 40.5
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 1.1e-28 131.0 219 44.3
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.1e-28 131.0 230 43.0
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.1e-28 131.0 231 39.4
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.1e-28 131.0 220 41.4
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.5e-28 129.8 204 43.6
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 7.4e-28 128.3 164 54.3
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.6e-27 127.1 232 40.1
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 2.1e-27 126.7 215 40.9
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 4.8e-27 125.6 204 43.1
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 6.2e-27 125.2 202 41.6
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 6.2e-27 125.2 208 42.3
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.4e-26 124.0 202 40.6
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.8e-26 123.6 202 40.6
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.8e-26 123.6 202 40.6
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 2.4e-26 123.2 211 44.5
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 4.0e-26 122.5 202 40.1
Sopen01g004270 Solanum pennellii HOM05D005900 ORTHO05D007306 2.0e-25 120.2 92 84.8
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.4e-25 119.4 213 38.0
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 4.5e-25 119.0 202 39.6
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 7.6e-25 118.2 203 40.4
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 9.9e-25 117.9 148 44.6
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 1.3e-24 117.5 148 44.6
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.7e-24 117.1 216 40.7
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 2.2e-24 116.7 78 65.4
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 2.9e-24 116.3 216 38.0
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 4.2e-23 112.5 221 41.6
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 9.3e-23 111.3 208 38.9
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 1.6e-22 110.5 161 43.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.6e-22 110.5 215 38.6
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.3e-21 107.5 183 38.3
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 6.7e-21 105.1 224 35.7
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 8.7e-21 104.8 220 41.4
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 1.3e-19 100.9 183 41.5
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 1.6e-19 100.5 231 37.7
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-19 99.8 158 39.2
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 2.8e-19 99.8 249 36.5
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 3.7e-19 99.4 204 38.2
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 6.2e-19 98.6 214 40.2
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.1e-18 97.8 91 50.5
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 1.8e-18 97.1 231 32.9
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.4e-18 96.7 195 39.5
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 3.1e-18 96.3 213 40.4
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 4.5e-17 92.4 212 37.7
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 2.5e-15 86.7 172 37.8
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 7.1e-15 85.1 176 34.7
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.0e-13 81.3 155 40.0
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.8e-13 80.5 155 40.0
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 1.1e-12 77.8 68 51.5
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.1e-10 69.7 140 39.3
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 1.2e-09 67.8 236 29.7
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 3.8e-08 62.8 192 32.8
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 5.5e-07 58.9 43 60.5


User provided reference genes

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