Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 2.3e-90 335.5 165 100.0
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.5e-84 316.2 157 98.7
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.1e-83 312.4 156 98.1
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 9.1e-79 297.0 157 91.7
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 2.0e-73 279.3 157 86.6
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 1.5e-65 253.1 161 75.8
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.1e-63 246.9 149 75.8
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 2.4e-63 245.7 158 75.3
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 4.1e-63 245.0 158 72.2
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.0e-63 244.2 157 73.2
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 9.2e-63 243.8 158 73.4
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 9.2e-63 243.8 158 73.4
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 9.2e-63 243.8 158 73.4
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.6e-62 243.0 165 69.7
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 2.7e-62 242.3 157 69.4
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 4.6e-62 241.5 149 73.8
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 5.9e-62 241.1 158 72.8
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.3e-61 240.0 152 73.0
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 73.4
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.7e-61 239.6 157 68.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 5.0e-61 238.0 158 70.9
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 5.0e-61 238.0 158 71.5
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 6.6e-61 237.7 158 70.3
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 6.6e-61 237.7 158 69.0
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 8.6e-61 237.3 158 70.9
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.1e-60 236.9 158 72.2
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.1e-60 236.9 158 72.2
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.1e-60 236.9 153 71.9
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.1e-60 236.9 158 70.3
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 2.5e-60 235.7 158 72.2
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.5e-60 235.7 147 72.8
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.3e-60 235.0 155 72.3
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 5.6e-60 234.6 155 68.4
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 5.6e-60 234.6 156 71.2
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 7.3e-60 234.2 158 69.0
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 9.5e-60 233.8 155 69.0
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 9.5e-60 233.8 157 68.8
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.2e-59 233.4 156 73.7
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 1.2e-59 233.4 151 70.2
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.2e-59 233.4 160 66.9
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.2e-59 233.4 163 66.9
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.6e-59 233.0 156 71.2
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 2.1e-59 232.6 158 69.0
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 2.1e-59 232.6 157 67.5
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 2.1e-59 232.6 157 68.2
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 2.8e-59 232.3 149 70.5
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 4.7e-59 231.5 162 66.0
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 4.7e-59 231.5 153 69.9
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 8.0e-59 230.7 153 68.6
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 1.0e-58 230.3 156 69.2
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 1.4e-58 229.9 144 72.2
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.8e-58 229.6 160 65.0
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 2.3e-58 229.2 153 69.3
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 2.3e-58 229.2 153 69.3
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.3e-58 229.2 152 70.4
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 4.0e-58 228.4 149 69.1
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 5.2e-58 228.0 149 71.1
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 5.2e-58 228.0 149 70.5
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 6.8e-58 227.6 157 68.8
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 8.9e-58 227.3 165 66.7
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 8.9e-58 227.3 152 69.1
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 8.9e-58 227.3 154 67.5
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 1.5e-57 226.5 149 71.1
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 4.4e-57 224.9 151 68.9
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 4.4e-57 224.9 153 67.3
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.3e-56 223.4 158 64.6
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.9e-56 222.2 147 68.0
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 3.7e-56 221.9 152 71.1
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 3.7e-56 221.9 151 67.5
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 4.9e-56 221.5 151 68.9
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.4e-55 219.9 149 71.1
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 1.4e-55 219.9 152 68.4
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.9e-55 219.5 149 67.8
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.9e-55 219.5 130 82.3
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.4e-55 219.2 153 66.0
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 3.2e-55 218.8 149 67.8
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 5.4e-55 218.0 152 65.8
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 7.0e-55 217.6 160 66.2
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 9.2e-55 217.2 155 65.2
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 9.2e-55 217.2 149 67.1
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 9.2e-55 217.2 157 67.5
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 9.2e-55 217.2 151 68.9
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 1.2e-54 216.9 159 66.0
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 1.2e-54 216.9 147 68.7
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.7e-54 215.7 149 66.4
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.7e-54 215.7 154 66.2
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 6.0e-54 214.5 146 70.5
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 7.8e-54 214.2 148 68.9
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 3.9e-53 211.8 148 68.9
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 6.6e-53 211.1 134 73.9
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 6.6e-53 211.1 143 66.4
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 3.3e-52 208.8 150 66.7
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 7.3e-52 207.6 151 64.9
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 9.5e-52 207.2 145 67.6
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 2.8e-51 205.7 144 66.7
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 6.2e-51 204.5 155 62.6
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.4e-50 203.4 148 65.5
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 3.1e-50 202.2 147 64.6
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 4.0e-50 201.8 142 66.2
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 5.2e-50 201.4 142 66.2
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 8.9e-50 200.7 147 63.9
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 8.9e-50 200.7 142 66.2
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 1.2e-49 200.3 147 63.9
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.2e-49 200.3 142 66.2
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.2e-49 200.3 144 64.6
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 9.8e-49 197.2 152 61.8
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 1.7e-48 196.4 147 62.6
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 1.7e-48 196.4 153 61.4
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 1.7e-48 196.4 147 62.6
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 9.2e-47 190.7 142 62.7
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 9.2e-47 190.7 147 59.2
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 2.5e-44 182.6 127 70.1
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 2.5e-44 182.6 114 78.9
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 4.3e-44 181.8 142 63.4
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.1e-42 177.2 150 56.7
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.1e-42 177.2 146 56.8
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 3.4e-41 172.2 142 58.5
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 8.4e-40 167.5 131 58.8
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 5.4e-39 164.9 148 53.4
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 1.6e-38 163.3 98 73.5
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.6e-38 163.3 118 64.4
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.0e-37 160.6 146 49.3
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.5e-36 156.0 147 52.4
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 8.4e-32 141.0 143 50.3
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 1.4e-31 140.2 146 51.4
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 4.2e-31 138.7 136 54.4
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 7.1e-31 137.9 102 61.8
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.1e-30 136.3 145 49.0
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 8.7e-29 131.0 96 61.5
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 9.9e-25 117.5 150 42.0
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.2e-22 110.5 84 59.5
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 4.6e-22 108.6 85 58.8
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 6.0e-22 108.2 90 56.7
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 1.3e-21 107.1 151 41.1


User provided reference genes

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