Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g009440.3 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.1e-30 136.0 70 100.0
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 1.7e-26 122.1 63 100.0
PGSC0003DMG401002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 8.5e-26 119.8 63 98.4
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.4e-25 119.0 65 92.3
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 4.2e-25 117.5 63 93.7
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 4.2e-25 117.5 63 93.7
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 5.7e-22 107.1 63 84.1
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 4.1e-20 100.9 63 81.0
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 5.3e-20 100.5 62 77.4
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 5.3e-20 100.5 59 81.4
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 6.9e-20 100.1 60 78.3
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 9.1e-20 99.8 61 78.7
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 2.0e-19 98.6 63 74.6
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 2.0e-19 98.6 63 77.8
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 2.0e-19 98.6 63 76.2
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 2.6e-19 98.2 63 79.4
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 3.4e-19 97.8 63 77.8
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 3.4e-19 97.8 63 77.8
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 5.9e-19 97.1 63 76.2
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 5.9e-19 97.1 63 74.6
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 7.7e-19 96.7 67 68.7
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 1.0e-18 96.3 63 76.2
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 1.3e-18 95.9 63 73.0
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 1.3e-18 95.9 56 80.4
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 1.7e-18 95.5 61 75.4
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.7e-18 95.5 63 74.6
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 2.2e-18 95.1 62 75.8
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 2.2e-18 95.1 64 76.6
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 2.2e-18 95.1 64 76.6
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 2.9e-18 94.7 58 77.6
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 2.9e-18 94.7 63 73.0
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 2.9e-18 94.7 65 73.8
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 3.8e-18 94.4 63 71.4
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 3.8e-18 94.4 63 73.0
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 3.8e-18 94.4 63 71.4
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 3.8e-18 94.4 63 71.4
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 5.0e-18 94.0 61 73.8
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 5.0e-18 94.0 65 72.3
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 5.0e-18 94.0 63 71.4
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 6.5e-18 93.6 58 79.3
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 1.1e-17 92.8 61 75.4
ATR0789G158 Amborella trichopoda HOM05D003456 ORTHO05D004082 1.1e-17 92.8 64 71.9
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 1.1e-17 92.8 63 69.8
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 1.1e-17 92.8 63 69.8
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 1.1e-17 92.8 63 71.4
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 1.1e-17 92.8 61 73.8
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.1e-17 92.8 58 77.6
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 1.1e-17 92.8 63 74.6
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 1.4e-17 92.4 63 71.4
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.4e-17 92.4 58 79.3
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 1.9e-17 92.0 61 73.8
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 1.9e-17 92.0 61 70.5
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.9e-17 92.0 63 73.0
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.9e-17 92.0 61 73.8
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 2.5e-17 91.7 61 70.5
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 2.5e-17 91.7 64 75.0
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 2.5e-17 91.7 61 70.5
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 3.2e-17 91.3 61 70.5
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 3.2e-17 91.3 65 67.7
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 3.2e-17 91.3 61 73.8
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 3.2e-17 91.3 65 64.6
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 3.2e-17 91.3 63 68.3
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 3.2e-17 91.3 63 71.4
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 4.2e-17 90.9 63 71.4
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 4.2e-17 90.9 61 68.9
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 4.2e-17 90.9 61 70.5
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 4.2e-17 90.9 61 70.5
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 4.2e-17 90.9 61 70.5
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 4.2e-17 90.9 63 69.8
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 4.2e-17 90.9 61 70.5
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 5.5e-17 90.5 58 74.1
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 5.5e-17 90.5 61 70.5
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 7.2e-17 90.1 61 72.1
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 7.2e-17 90.1 63 71.4
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 7.2e-17 90.1 63 69.8
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 7.2e-17 90.1 63 69.8
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 9.4e-17 89.7 61 68.9
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 9.4e-17 89.7 61 72.1
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 9.4e-17 89.7 61 70.5
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 1.2e-16 89.4 61 68.9
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.2e-16 89.4 64 71.9
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.2e-16 89.4 64 71.9
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.2e-16 89.4 63 68.3
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.2e-16 89.4 51 82.4
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 1.2e-16 89.4 63 69.8
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 1.6e-16 89.0 59 71.2
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 1.6e-16 89.0 59 71.2
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 1.6e-16 89.0 61 68.9
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 1.6e-16 89.0 54 77.8
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 1.6e-16 89.0 54 77.8
CDE11G1238 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 2.1e-16 88.6 57 75.4
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 2.1e-16 88.6 61 68.9
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 2.1e-16 88.6 63 69.8
Hund06783 Selenicereus undatus HOM05D003456 ORTHO05D004082 2.7e-16 88.2 61 68.9
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 3.6e-16 87.8 62 67.7
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 3.6e-16 87.8 58 72.4
Hund06781 Selenicereus undatus HOM05D003456 ORTHO05D004082 3.6e-16 87.8 61 72.1
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 4.7e-16 87.4 61 67.2
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 6.1e-16 87.0 63 68.3
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 6.1e-16 87.0 63 68.3
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 6.1e-16 87.0 63 68.3
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.0e-15 86.3 64 70.3
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.0e-15 86.3 59 71.2
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 1.0e-15 86.3 64 70.3
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 1.4e-15 85.9 64 68.8
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 1.8e-15 85.5 63 66.7
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 1.8e-15 85.5 61 67.2
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.8e-15 85.5 63 66.7
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.8e-15 85.5 63 66.7
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 1.8e-15 85.5 67 65.7
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 1.8e-15 85.5 61 67.2
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 1.8e-15 85.5 63 71.4
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 2.3e-15 85.1 58 67.2
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 2.3e-15 85.1 63 66.7
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.3e-15 85.1 63 66.7
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 3.0e-15 84.7 61 68.9
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 3.9e-15 84.3 64 67.2
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 5.2e-15 84.0 61 63.9
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.2e-15 84.0 63 66.7
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 6.7e-15 83.6 57 64.9
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 6.7e-15 83.6 63 65.1
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 6.7e-15 83.6 63 65.1
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 8.8e-15 83.2 54 68.5
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 8.8e-15 83.2 45 86.7
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-14 82.8 63 65.1
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 1.1e-14 82.8 57 64.9
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 2.6e-14 81.6 63 63.5
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.6e-14 81.6 64 65.6
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 3.3e-14 81.3 48 79.2
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 4.4e-14 80.9 63 66.7
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 7.4e-14 80.1 59 67.8
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 2.2e-13 78.6 44 84.1
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 2.2e-13 78.6 63 61.9
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 3.7e-13 77.8 63 60.3
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 3.7e-13 77.8 48 75.0
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 4.8e-13 77.4 54 66.7
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 6.3e-13 77.0 49 71.4
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 8.2e-13 76.6 47 74.5
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.1e-12 76.3 47 72.3
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 1.1e-12 76.3 47 72.3
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 1.1e-12 76.3 47 74.5
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 1.8e-12 75.5 51 66.7
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 2.4e-12 75.1 47 72.3
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 2.4e-12 75.1 47 74.5
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.4e-12 75.1 47 72.3
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 4.1e-12 74.3 47 72.3
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 4.1e-12 74.3 47 72.3
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 7.0e-12 73.6 63 60.3
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 9.1e-12 73.2 62 56.5
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 2.0e-11 72.0 47 70.2
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 2.0e-11 72.0 47 68.1
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 2.6e-11 71.6 59 61.0
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 3.5e-11 71.2 57 57.9
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 7.7e-11 70.1 48 64.6
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 1.0e-10 69.7 49 65.3
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 2.2e-10 68.6 47 59.6
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 3.8e-10 67.8 63 50.8
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 5.0e-10 67.4 40 77.5
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 5.0e-10 67.4 38 89.5
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 6.5e-10 67.0 47 61.7
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 3.2e-09 64.7 61 52.5
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 3.6e-08 61.2 49 55.1
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 4.7e-08 60.8 31 87.1
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 1.4e-07 59.3 36 77.8
Nn5g30493 Nelumbo nucifera HOM05D003456 ORTHO05D004082 2.0e-06 55.5 60 48.3
Nn4g25160 Nelumbo nucifera HOM05D003456 ORTHO05D004082 5.7e-06 53.9 61 50.8
Nn4g24282 Nelumbo nucifera HOM05D003456 ORTHO05D004082 7.5e-06 53.5 41 61.0


User provided reference genes

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