Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.4e-125 453.0 233 100.0
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 3.8e-123 444.9 233 97.0
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.1e-117 426.8 231 93.9
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 3.9e-91 338.6 225 76.9
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.5e-82 309.3 231 69.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 6.9e-72 274.6 205 69.8
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 6.4e-70 268.1 222 64.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 7.1e-61 238.0 231 53.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.5e-60 235.7 231 53.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.0e-60 235.0 231 53.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.8e-59 233.4 231 52.8
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 3.9e-59 232.3 234 50.9
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.1e-58 230.7 231 52.4
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.5e-58 230.3 231 52.4
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.3e-57 227.3 231 49.4
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.7e-57 225.7 219 52.1
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 4.8e-57 225.3 220 53.6
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.4e-56 223.8 232 49.6
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.4e-56 223.8 232 49.6
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.0e-56 222.2 244 51.6
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.0e-55 219.9 233 49.8
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 7.6e-55 218.0 221 52.5
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 6.4e-54 214.9 231 51.1
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.1e-53 214.2 219 48.9
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.4e-53 213.8 222 51.8
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.9e-53 213.4 231 48.9
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.4e-53 213.0 221 51.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 7.1e-53 211.5 220 51.8
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.6e-52 210.3 225 49.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 6.0e-52 208.4 221 51.6
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.3e-51 206.5 228 47.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 5.1e-51 205.3 219 49.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 8.7e-51 204.5 223 50.7
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 7.4e-50 201.4 217 50.2
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.1e-49 199.9 232 44.4
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.8e-49 199.5 206 52.4
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.7e-49 199.1 221 48.9
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.4e-48 197.2 231 46.8
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.1e-48 196.1 234 45.3
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 6.9e-48 194.9 220 45.9
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 9.0e-48 194.5 234 45.7
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 5.8e-47 191.8 231 45.0
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 5.8e-47 191.8 223 46.6
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.0e-46 191.0 226 47.3
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.7e-46 190.3 221 48.4
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.2e-46 189.9 233 46.8
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 2.9e-46 189.5 235 46.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 2.9e-46 189.5 239 43.1
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 4.9e-46 188.7 220 45.0
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 8.4e-46 188.0 223 45.7
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.4e-45 187.2 212 43.9
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 2.5e-45 186.4 223 45.3
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 5.5e-45 185.3 218 45.9
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.6e-44 183.7 231 44.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 3.5e-44 182.6 224 46.0
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.6e-44 182.2 248 42.7
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 6.0e-44 181.8 262 42.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.3e-43 179.9 209 48.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 3.0e-43 179.5 225 44.4
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 3.9e-43 179.1 231 42.9
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 3.9e-43 179.1 229 44.1
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 5.1e-43 178.7 231 42.0
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 6.7e-43 178.3 222 46.4
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.3e-42 176.0 233 40.3
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.3e-42 176.0 242 43.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.6e-41 173.7 221 44.8
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.8e-41 172.9 219 42.9
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.4e-40 170.6 231 40.3
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.4e-40 169.9 213 46.0
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 3.1e-40 169.5 221 43.0
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 4.1e-40 169.1 221 43.9
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 5.3e-40 168.7 208 43.3
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.5e-39 167.2 219 41.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.5e-39 167.2 220 42.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 2.0e-39 166.8 222 42.3
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.6e-39 166.4 219 42.9
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.4e-39 166.0 231 42.4
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.4e-39 166.0 233 38.2
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.3e-38 164.1 181 47.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.2e-38 163.3 228 39.9
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.8e-38 162.5 217 43.3
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 5.0e-38 162.2 239 39.3
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 8.5e-38 161.4 219 40.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 8.5e-38 161.4 219 40.6
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.5e-37 159.8 231 39.8
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 3.2e-37 159.5 219 40.2
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 3.2e-37 159.5 219 40.2
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 3.2e-37 159.5 219 40.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 9.3e-37 157.9 239 38.5
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.6e-36 157.1 216 38.4
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.6e-36 156.0 207 44.9
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.6e-36 155.6 219 38.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 6.1e-36 155.2 246 36.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 7.9e-36 154.8 239 36.8
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 5.1e-35 152.1 275 36.4
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 8.7e-35 151.4 216 42.1
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.9e-34 150.2 220 40.0
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.5e-34 149.8 215 41.9
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 3.3e-34 149.4 207 43.0
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 4.3e-34 149.1 178 46.1
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 5.7e-34 148.7 236 35.6
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 9.7e-34 147.9 245 38.8
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 2.2e-33 146.7 219 38.8
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.8e-33 146.4 212 39.2
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.7e-33 146.0 223 37.2
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 2.4e-32 143.3 239 35.1
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 9.1e-32 141.4 159 48.4
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.6e-31 139.8 219 35.2
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 7.7e-31 138.3 97 71.1
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 3.8e-30 136.0 226 38.9
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 6.5e-30 135.2 204 39.2
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.5e-30 135.2 176 42.6
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.5e-29 133.3 221 38.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 7.2e-29 131.7 220 36.8
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.0e-27 127.9 205 38.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.0e-27 127.9 205 38.5
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.1e-26 124.4 210 34.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-26 124.0 226 38.1
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 3.3e-26 122.9 210 34.3
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 9.7e-26 121.3 142 50.7
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.7e-25 120.6 226 30.5
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 8.2e-25 118.2 194 37.6
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.4e-24 117.5 182 36.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 5.3e-24 115.5 124 46.8
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.0e-23 113.6 204 36.3
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.6e-23 113.2 212 33.0
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 1.1e-21 107.8 95 57.9
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 3.0e-19 99.8 180 33.9
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.8e-19 98.2 88 56.8
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.0e-18 97.1 64 71.9
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 4.4e-18 95.9 80 57.5
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.7e-17 92.8 140 38.6
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 4.8e-17 92.4 104 44.2
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 4.1e-16 89.4 181 32.0
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 7.0e-16 88.6 101 48.5
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 2.0e-15 87.0 81 55.6
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 7.7e-15 85.1 121 42.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-14 84.7 56 71.4
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.0e-14 84.7 56 71.4
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 8.5e-14 81.6 165 33.3
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 7.2e-13 78.6 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.0e-10 70.5 130 36.9
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.0e-10 70.5 232 27.2
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.1e-08 64.7 72 41.7
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 9.1e-08 61.6 215 27.4
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.2e-07 61.2 216 26.4


User provided reference genes

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