Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 5.5e-53 210.7 106 100.0
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 5.5e-53 210.7 106 100.0
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 2.0e-50 202.2 106 94.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.4e-48 195.3 106 90.6
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.7e-46 189.1 134 76.9
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 5.7e-42 174.1 106 77.4
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 9.8e-42 173.3 106 77.4
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 6.3e-41 170.6 106 84.0
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.1e-40 169.9 106 76.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 1.1e-40 169.9 106 75.5
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.1e-40 169.9 106 83.0
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.4e-40 169.5 104 75.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.8e-40 169.1 102 78.4
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.4e-40 168.7 105 75.2
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 74.5
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 3.1e-40 168.3 105 74.3
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 73.6
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 3.1e-40 168.3 105 72.4
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 3.1e-40 168.3 102 77.5
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.1e-40 168.3 102 77.5
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.1e-40 168.3 102 77.5
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.1e-40 167.9 106 75.5
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 5.4e-40 167.5 105 74.3
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 7.0e-40 167.2 105 74.3
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 7.0e-40 167.2 105 73.3
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 7.0e-40 167.2 105 72.4
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 74.3
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 73.3
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 74.3
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 73.3
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 73.3
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 1.2e-39 166.4 102 76.5
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 75.2
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 72.4
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 73.3
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 69.5
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.0e-39 165.6 105 72.4
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 71.4
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.7e-39 165.2 102 76.5
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 74.3
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 3.5e-39 164.9 102 73.5
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 4.5e-39 164.5 105 72.4
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 7.8e-39 163.7 106 74.5
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 70.5
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 70.5
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-38 162.9 106 73.6
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.3e-38 162.9 104 74.0
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 70.5
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 1.3e-38 162.9 103 75.7
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.7e-38 162.5 106 73.6
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 1.7e-38 162.5 105 68.6
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 72.8
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 69.5
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 2.9e-38 161.8 103 71.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 70.5
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 69.5
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 72.4
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 70.5
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 71.4
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 5.0e-38 161.0 105 69.5
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 5.0e-38 161.0 105 70.5
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 5.0e-38 161.0 105 70.5
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 6.6e-38 160.6 106 72.6
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 71.4
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 71.4
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 68.6
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.5e-37 159.5 104 69.2
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 71.4
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 66.7
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 4.3e-37 157.9 105 68.6
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 70.5
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 68.6
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 70.5
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 70.5
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 66.7
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 9.5e-37 156.8 106 68.9
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 9.5e-37 156.8 106 68.9
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 70.5
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 69.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 4.7e-36 154.5 103 69.9
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 68.9
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 68.9
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 6.1e-36 154.1 105 68.6
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 6.1e-36 154.1 105 67.6
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 8.0e-36 153.7 105 65.7
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 8.0e-36 153.7 103 69.9
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.3e-35 152.1 105 70.5
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 3.0e-35 151.8 103 67.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 64.8
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 5.2e-35 151.0 103 67.0
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 5.2e-35 151.0 99 71.7
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 6.8e-35 150.6 105 68.6
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 6.8e-35 150.6 104 65.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.2e-34 149.8 102 67.6
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 2.6e-34 148.7 106 67.9
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.4e-34 148.3 102 70.6
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 3.4e-34 148.3 105 62.9
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 5.7e-34 147.5 104 65.4
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 9.8e-34 146.7 105 62.9
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 3.7e-33 144.8 99 65.7
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 4.9e-33 144.4 104 62.5
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 1.1e-32 143.3 102 66.7
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.2e-32 141.7 106 61.3
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 4.6e-31 137.9 134 53.7
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 2.3e-30 135.6 92 69.6
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 3.3e-29 131.7 106 58.5
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 4.3e-29 131.3 103 58.3
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 9.5e-29 130.2 107 60.7
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 6.2e-28 127.5 94 61.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 3.1e-27 125.2 96 58.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 2.0e-26 122.5 78 75.6
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 2.6e-26 122.1 93 58.1
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 3.7e-25 118.2 77 70.1
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.4e-24 116.3 95 58.9
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.2e-24 115.2 76 72.4
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 2.0e-23 112.5 91 58.2
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 3.5e-23 111.7 91 57.1
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 3.5e-23 111.7 86 64.0
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-22 109.8 71 71.8
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 1.7e-22 109.4 83 57.8
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 2.3e-22 109.0 76 69.7
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 6.6e-22 107.5 98 58.2
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.1e-21 106.7 71 70.4
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.2e-20 103.2 73 64.4
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 3.6e-20 101.7 113 49.6
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 6.2e-20 100.9 66 65.2
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.3e-19 99.0 106 51.9
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.2e-17 92.4 77 54.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 6.0e-15 84.3 49 83.7
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.8e-11 72.8 79 49.4
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 7.6e-10 67.4 45 60.0
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 1.3e-09 66.6 86 40.7
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 2.9e-09 65.5 50 64.0
Cre03.g183050 Chlamydomonas reinhardtii HOM05D005747 ORTHO05D007159 1.0e-06 57.0 99 28.3
ClCG10G020180 Citrullus lanatus HOM05D005747 ORTHO05D149649 1.3e-06 56.6 35 62.9
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.7e-06 56.2 42 52.4


User provided reference genes

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