Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.2e-102 375.2 198 100.0
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.6e-90 336.3 176 98.9
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.6e-88 327.4 175 96.6
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.1e-76 288.1 177 87.0
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.1e-75 287.0 177 86.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 2.2e-71 272.7 178 83.1
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 4.2e-70 268.5 178 80.3
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.9e-67 259.6 175 78.3
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.3e-67 258.5 176 79.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.3e-66 256.9 175 78.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.6e-66 256.5 176 77.8
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 4.8e-66 255.0 178 75.3
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.4e-65 253.4 178 77.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 6.9e-65 251.1 178 74.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.2e-64 250.4 175 76.0
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.6e-64 249.2 175 77.7
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 2.6e-64 249.2 180 76.1
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.6e-64 247.7 178 73.6
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.6e-64 247.7 178 73.6
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 7.6e-64 247.7 178 73.6
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.0e-63 247.3 180 75.6
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.3e-63 246.9 178 75.8
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.3e-63 246.9 178 74.2
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 8.4e-63 244.2 175 76.6
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 9.3e-62 240.7 190 71.6
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.2e-61 240.4 177 72.3
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.6e-61 240.0 179 72.1
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.6e-61 240.0 179 73.2
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 2.1e-61 239.6 180 70.6
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.1e-61 239.6 176 77.3
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 3.5e-61 238.8 173 72.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.5e-61 238.8 178 73.0
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 4.6e-61 238.4 174 74.1
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 7.9e-61 237.7 173 76.3
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 7.9e-61 237.7 174 73.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.3e-60 236.9 179 72.6
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.8e-60 236.5 178 71.3
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.0e-60 235.7 178 70.2
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 3.9e-60 235.3 178 66.9
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 3.9e-60 235.3 180 68.3
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.9e-60 235.3 175 72.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 8.7e-60 234.2 180 72.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.1e-59 233.8 179 72.1
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.1e-59 233.8 179 73.2
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.5e-59 233.4 174 71.8
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.9e-59 233.0 174 72.4
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.9e-59 233.0 174 72.4
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 4.3e-59 231.9 178 70.8
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.7e-59 231.5 174 71.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 5.7e-59 231.5 174 71.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 5.7e-59 231.5 174 71.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 5.7e-59 231.5 183 69.9
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 5.7e-59 231.5 176 71.6
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 5.7e-59 231.5 174 70.7
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 9.6e-59 230.7 175 70.3
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 9.6e-59 230.7 177 71.2
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-58 230.3 174 71.3
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.3e-58 230.3 174 71.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.3e-58 230.3 176 71.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-58 230.3 176 71.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.3e-58 230.3 176 71.0
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-58 229.9 174 71.3
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.6e-58 229.9 174 70.1
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.6e-58 229.9 181 69.6
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 1.6e-58 229.9 180 71.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.1e-58 229.6 180 69.4
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 2.1e-58 229.6 181 70.2
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.1e-58 229.6 176 69.3
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.8e-58 229.2 176 71.6
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 2.8e-58 229.2 181 69.1
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.7e-58 228.8 176 70.5
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.8e-58 228.4 181 70.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 4.8e-58 228.4 174 70.7
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.8e-58 228.4 176 70.5
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 4.8e-58 228.4 155 74.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 6.3e-58 228.0 176 69.9
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 8.2e-58 227.6 177 68.9
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 8.2e-58 227.6 183 70.5
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.1e-57 227.3 183 68.9
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.1e-57 227.3 174 70.7
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.1e-57 227.3 174 70.7
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.1e-57 227.3 184 66.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.4e-57 226.9 176 69.9
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.4e-57 226.9 176 69.9
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.8e-57 226.5 184 67.9
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.8e-57 226.5 181 69.6
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 2.4e-57 226.1 174 69.5
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.4e-57 226.1 176 68.8
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 9.0e-57 224.2 179 70.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 1.2e-56 223.8 179 68.7
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.5e-56 223.4 177 69.5
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.5e-56 223.4 185 64.9
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 2.6e-56 222.6 175 69.1
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.4e-56 222.2 179 69.8
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 7.6e-56 221.1 177 68.9
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.0e-55 220.7 145 77.2
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.3e-55 220.3 172 70.9
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.8e-55 218.8 176 65.9
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 5.0e-55 218.4 176 63.1
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 5.0e-55 218.4 161 71.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.1e-53 213.0 182 62.1
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 6.1e-53 211.5 156 70.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 7.9e-53 211.1 160 70.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 3.9e-52 208.8 222 57.2
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.3e-51 205.3 175 64.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.1e-46 190.7 132 71.2
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.4e-46 190.3 176 61.9
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 7.2e-46 188.0 132 70.5
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.6e-45 185.7 160 65.0
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 6.7e-44 181.4 94 95.7
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.8e-42 176.0 116 70.7
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 6.3e-42 174.9 162 55.6
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 3.1e-41 172.6 120 68.3
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 6.9e-41 171.4 118 66.9
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.6e-40 169.5 149 53.7
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.8e-39 165.6 176 48.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.9e-31 139.4 89 80.9
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.1e-29 133.3 68 97.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.1e-27 127.5 66 93.9
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 2.0e-27 126.7 148 53.4
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 7.7e-24 114.8 94 54.3
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 4.7e-21 105.5 81 69.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.8e-20 103.6 95 49.5
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 8.3e-18 94.7 114 40.4
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.7e-16 89.7 88 61.4
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.0e-15 87.8 66 68.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 3.2e-14 82.8 60 68.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.8e-12 77.0 174 37.4
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.8e-12 77.0 174 37.4
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 3.0e-12 76.3 174 37.4
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 5.7e-11 72.0 39 87.2
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 6.6e-07 58.5 103 31.1


User provided reference genes

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