Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.2e-144 516.5 272 100.0
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.2e-131 473.4 275 93.8
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.1e-97 360.5 290 73.8
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 9.2e-44 181.4 297 45.1
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.5e-43 179.5 307 44.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.0e-43 178.7 307 42.7
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.0e-42 177.9 321 40.8
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 5.6e-41 172.2 283 43.5
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 7.3e-41 171.8 297 40.7
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.1e-40 170.2 333 38.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.8e-40 169.9 322 41.3
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 4.7e-40 169.1 291 43.3
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.4e-39 167.5 310 42.6
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.4e-39 167.5 289 41.5
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.8e-39 167.2 300 43.7
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 6.8e-39 165.2 307 42.7
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.2e-38 164.5 305 40.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.5e-38 164.1 288 44.1
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.5e-38 164.1 288 44.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.5e-38 164.1 333 38.1
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-38 164.1 304 40.5
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.4e-38 162.9 298 41.3
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-38 162.2 300 41.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 7.6e-38 161.8 305 40.3
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.7e-37 160.6 299 42.5
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 3.8e-37 159.5 272 41.2
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 6.4e-37 158.7 303 38.9
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 6.4e-37 158.7 266 41.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 6.4e-37 158.7 270 41.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 8.4e-37 158.3 269 43.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 8.4e-37 158.3 298 41.9
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.4e-36 156.8 325 40.0
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.1e-36 156.0 321 38.3
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.1e-36 156.0 331 38.7
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 4.1e-36 156.0 285 41.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 4.1e-36 156.0 278 41.0
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 5.4e-36 155.6 307 42.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.4e-36 155.6 327 41.0
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 7.1e-36 155.2 280 41.4
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 9.2e-36 154.8 299 43.5
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 9.2e-36 154.8 327 41.0
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-35 154.5 327 40.4
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.1e-35 153.7 324 42.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.7e-35 153.3 314 39.2
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 7.8e-35 151.8 327 40.7
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 7.8e-35 151.8 277 41.2
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.3e-34 151.0 271 40.2
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.7e-34 150.6 277 40.8
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.3e-34 150.2 277 41.9
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 2.3e-34 150.2 323 36.5
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.0e-34 149.8 312 39.1
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.9e-34 149.4 290 40.3
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 8.6e-34 148.3 307 42.3
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-33 147.9 318 35.8
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.9e-33 147.1 313 40.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.3e-33 146.4 333 36.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 4.3e-33 146.0 315 38.4
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 4.3e-33 146.0 315 38.4
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 9.6e-33 144.8 285 38.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.1e-32 143.7 277 38.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.1e-32 143.7 304 40.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 6.2e-32 142.1 270 37.0
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-31 141.4 322 37.6
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 4.0e-31 139.4 303 38.3
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 6.9e-31 138.7 285 37.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 6.9e-31 138.7 208 46.6
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 6.9e-31 138.7 208 46.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.2e-30 137.9 308 38.6
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-30 137.5 215 45.1
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-30 137.5 215 45.1
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-30 137.1 215 44.7
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-30 137.1 215 44.7
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.0e-30 137.1 276 39.5
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 2.6e-30 136.7 258 37.2
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-30 135.6 215 44.7
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 7.6e-30 135.2 231 43.7
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.3e-29 134.4 191 45.0
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.7e-29 134.0 205 45.4
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 3.8e-29 132.9 298 37.2
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 6.4e-29 132.1 294 38.1
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.1e-28 131.3 287 38.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-28 131.3 344 35.5
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.9e-28 130.6 222 42.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 3.2e-28 129.8 265 38.1
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 5.4e-28 129.0 297 36.4
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.7e-27 126.7 263 35.0
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.0e-26 124.8 315 36.2
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.3e-26 124.4 291 36.1
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.7e-26 124.0 286 36.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.3e-26 123.6 287 35.5
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-26 123.2 283 33.9
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 3.0e-26 123.2 289 33.9
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 3.0e-26 123.2 289 33.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.0e-26 123.2 203 41.9
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-25 121.3 269 37.2
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-25 121.3 215 43.3
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.5e-25 120.9 270 36.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.6e-24 117.5 289 32.9
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.6e-24 117.5 268 38.4
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 4.8e-24 115.9 302 33.1
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.8e-24 115.9 274 36.5
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.8e-24 115.9 223 40.4
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.2e-24 115.5 286 34.3
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.1e-23 113.2 295 36.6
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 6.9e-23 112.1 288 33.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 6.9e-23 112.1 298 36.2
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-22 110.9 391 31.5
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.0e-22 110.5 291 33.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 5.8e-22 109.0 305 36.7
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-22 109.0 192 44.3
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 7.6e-22 108.6 271 36.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.6e-22 108.6 300 31.0
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 9.9e-22 108.2 287 35.2
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 9.9e-22 108.2 284 34.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.7e-21 107.5 131 56.5
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.8e-21 106.3 190 45.3
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 8.4e-21 105.1 283 35.0
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.4e-20 104.4 137 48.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.4e-20 104.4 200 39.5
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 4.2e-20 102.8 79 73.4
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 4.2e-20 102.8 268 35.8
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-19 101.3 323 31.3
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-19 101.3 185 45.4
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.6e-19 100.9 264 32.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.7e-19 100.1 94 62.8
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.7e-19 100.1 298 32.9
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 3.5e-19 99.8 179 41.3
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.8e-18 97.4 257 35.0
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 3.9e-18 96.3 182 44.5
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 6.7e-18 95.5 287 31.7
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 8.7e-18 95.1 126 54.8
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.5e-17 94.4 211 36.0
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.5e-17 94.4 314 32.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 2.5e-17 93.6 312 30.8
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 3.3e-17 93.2 179 36.9
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 5.6e-17 92.4 295 31.9
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 5.6e-17 92.4 295 31.5
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 7.4e-17 92.0 308 31.8
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 9.6e-17 91.7 306 31.0
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.3e-16 91.3 307 30.9
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.6e-16 90.9 307 30.9
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 4.8e-16 89.4 288 30.6
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.1e-15 88.2 304 30.6
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.8e-15 87.4 220 33.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 2.4e-15 87.0 307 30.6
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 9.0e-15 85.1 290 33.4
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-12 78.2 266 31.6
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.2e-12 76.6 178 36.0
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.7e-11 73.6 140 37.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.3e-10 70.5 229 31.0
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.4e-09 65.5 282 27.7
Nitab4.5_0006156g0060 Nicotiana tabacum HOM05D004499 ORTHO05D004928 3.7e-08 63.2 60 61.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.8e-08 62.8 184 32.1
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.2e-08 62.4 147 34.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 8.1e-08 62.0 33 81.8
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 8.1e-08 62.0 281 26.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-07 61.6 209 33.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.8e-07 60.8 119 40.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 6.9e-07 58.9 52 51.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.9e-07 58.9 227 29.1
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.5e-06 57.8 207 30.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.5e-06 57.8 96 43.8
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-06 57.0 207 30.4


User provided reference genes

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