Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 8.2e-107 390.6 224 100.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 8.2e-107 390.6 224 98.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 4.5e-97 358.2 224 79.9
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 6.6e-88 327.8 219 74.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 8.6e-88 327.4 224 71.4
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.5e-87 326.6 216 88.9
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 3.3e-87 325.5 224 71.9
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 9.5e-87 323.9 222 81.5
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 3.6e-86 322.0 224 69.2
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.0e-86 320.9 224 69.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.3e-85 319.3 220 70.9
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.0e-85 318.5 224 80.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.2e-85 318.2 219 70.3
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.5e-84 316.6 224 79.9
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 4.9e-83 311.6 219 68.5
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.4e-82 309.3 225 68.9
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 9.2e-82 307.4 219 67.6
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.2e-81 307.0 222 68.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 4.6e-81 305.1 219 76.3
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.6e-78 296.6 220 65.9
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.8e-77 293.1 222 79.3
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 3.1e-77 292.4 222 79.3
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 4.0e-77 292.0 218 78.4
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.0e-76 289.7 211 69.2
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 4.4e-76 288.5 219 64.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.9e-75 285.8 216 64.4
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 3.7e-75 285.4 221 76.9
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 8.3e-75 284.3 216 64.4
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.3e-75 284.3 216 64.4
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.1e-74 283.9 216 79.2
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.4e-74 283.5 216 64.8
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.9e-74 283.1 223 77.1
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 2.4e-74 282.7 224 62.9
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.4e-74 282.7 216 64.4
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.2e-74 282.3 214 65.4
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 3.2e-74 282.3 214 77.6
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.2e-74 282.3 216 66.2
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 4.1e-74 282.0 215 78.6
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 9.2e-74 280.8 210 65.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.2e-73 280.4 223 64.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-73 280.4 219 65.8
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-73 280.4 219 65.8
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.2e-73 280.4 203 66.0
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-73 280.0 220 65.9
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.0e-73 279.6 210 66.2
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.0e-72 277.3 223 76.2
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-72 276.2 221 65.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 3.0e-72 275.8 215 76.7
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 3.9e-72 275.4 214 64.0
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.9e-72 275.4 217 74.2
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.9e-72 275.4 210 75.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 5.0e-72 275.0 216 74.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 6.6e-72 274.6 211 63.5
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 8.6e-72 274.2 220 62.7
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.1e-71 273.9 208 64.4
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.5e-71 273.5 210 75.2
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.5e-71 273.5 220 63.6
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.9e-71 273.1 219 69.4
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.3e-71 272.3 216 76.4
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 5.6e-71 271.6 220 62.7
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 9.5e-71 270.8 215 64.2
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-70 270.4 222 61.7
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-70 270.0 221 65.2
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-70 270.0 221 65.2
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-70 270.0 221 65.2
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-70 270.0 221 65.2
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-70 270.0 221 65.2
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.8e-70 269.2 222 63.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 3.6e-70 268.9 221 69.7
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 4.7e-70 268.5 212 62.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 6.2e-70 268.1 213 76.5
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.1e-69 267.3 211 63.5
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 2.3e-69 266.2 159 80.5
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.5e-68 263.5 222 71.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.6e-68 262.7 220 62.3
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.6e-68 262.7 220 62.3
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.4e-68 262.3 217 60.8
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.4e-68 262.3 224 74.6
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 4.4e-68 261.9 211 62.6
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 5.8e-68 261.5 221 60.2
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 5.8e-68 261.5 211 61.6
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 7.5e-68 261.2 220 62.3
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.3e-67 260.4 220 60.5
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 1.3e-67 260.4 216 72.2
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 1.3e-67 260.4 216 72.2
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.7e-67 260.0 215 64.2
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.7e-67 260.0 217 61.3
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.7e-67 260.0 212 62.3
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.2e-67 259.6 220 61.8
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 2.9e-67 259.2 214 73.4
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 2.9e-67 259.2 214 73.4
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 4.9e-67 258.5 212 62.3
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 4.9e-67 258.5 212 62.3
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.9e-67 258.5 212 62.3
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 6.4e-67 258.1 212 62.3
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.1e-66 257.3 212 75.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.4e-66 256.9 216 59.7
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.9e-66 256.5 216 63.9
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 4.1e-66 255.4 212 61.3
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 5.4e-66 255.0 221 71.5
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.6e-65 253.4 212 61.3
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 2.1e-65 253.1 212 61.3
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 2.1e-65 253.1 212 61.3
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 4.6e-65 251.9 188 64.9
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 6.0e-65 251.5 211 60.7
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 7.8e-65 251.1 213 58.7
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 7.8e-65 251.1 211 63.0
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 7.3e-63 244.6 216 71.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.1e-62 243.0 210 59.5
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.1e-61 240.7 218 56.4
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.1e-61 240.7 210 59.0
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.1e-61 239.2 210 58.6
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 8.9e-61 237.7 211 58.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 7.1e-58 228.0 211 54.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.0e-56 224.2 158 70.9
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.7e-56 223.4 211 55.9
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 2.3e-56 223.0 210 56.2
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.9e-55 219.9 214 68.7
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.8e-54 216.1 212 48.6
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.1e-53 214.2 210 52.9
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 4.0e-53 212.2 159 67.3
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.2e-52 210.7 210 50.5
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 9.9e-52 207.6 211 48.3
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 2.9e-51 206.1 215 51.6
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.9e-50 203.4 151 66.2
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.2e-50 202.2 163 62.6
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.9e-48 195.7 162 71.6
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.9e-47 193.4 217 50.7
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 1.6e-46 190.3 128 71.1
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 5.8e-44 181.8 129 69.0
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 9.9e-44 181.0 128 67.2
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.4e-43 178.3 213 63.8
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.2e-41 174.1 214 55.1
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 3.6e-38 162.5 101 76.2
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 6.9e-37 158.3 163 54.0
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.5e-36 155.6 97 74.2
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 4.5e-36 155.6 129 60.5
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 9.6e-31 137.9 101 90.1
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 7.7e-12 75.1 199 30.7
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 4.8e-06 55.8 136 32.4
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 4.8e-06 55.8 107 37.4


User provided reference genes

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