Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 9.0e-212 740.0 364 100.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.2e-181 639.0 365 87.7
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.6e-176 621.7 358 85.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.7e-168 595.5 480 65.8
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.1e-168 594.3 384 79.7
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.4e-167 593.2 308 92.2
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 2.2e-162 575.9 365 76.7
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.2e-162 575.9 366 77.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.9e-161 572.8 371 75.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.5e-161 572.4 366 76.8
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.2e-161 572.0 365 77.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 4.2e-161 571.6 365 76.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.6e-160 568.5 365 77.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.0e-160 567.4 366 76.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.0e-159 567.0 371 74.7
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.8e-159 566.2 366 75.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.3e-159 565.8 374 74.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.2e-159 564.7 373 75.6
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 6.8e-159 564.3 365 76.2
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.0e-158 562.8 370 74.9
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.4e-158 562.0 365 76.7
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.8e-158 560.5 371 75.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.7e-157 559.7 371 75.7
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.7e-157 559.7 366 75.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.7e-157 559.7 369 75.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.7e-157 559.7 369 72.6
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.2e-157 559.3 370 74.1
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.2e-157 559.3 354 78.5
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.4e-156 556.6 367 74.1
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-156 556.6 365 75.6
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 5.4e-156 554.7 365 74.2
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.0e-155 552.7 311 83.0
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.0e-155 552.7 308 84.1
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.7e-155 552.4 365 75.3
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.5e-155 552.0 364 73.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.9e-155 551.2 373 73.7
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 7.7e-155 550.8 325 80.0
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.9e-154 548.9 281 97.2
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 6.6e-154 547.7 364 72.3
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 6.6e-154 547.7 365 72.3
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 3.3e-153 545.4 386 72.5
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.2e-153 545.0 367 72.8
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 5.5e-153 544.7 365 72.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 8.0e-152 540.8 372 72.3
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.0e-151 540.4 323 79.6
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.0e-151 540.4 316 79.4
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.0e-151 540.4 372 72.3
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.8e-151 539.7 361 74.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.8e-151 539.7 369 72.9
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.8e-151 539.7 366 72.1
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.3e-151 539.3 317 80.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 4.0e-151 538.5 378 70.1
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.2e-150 537.0 369 72.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.5e-150 536.6 364 73.1
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.5e-150 536.6 366 69.7
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.5e-150 536.6 370 70.3
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.6e-150 535.8 367 70.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.4e-150 535.0 366 71.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 5.7e-150 534.6 389 68.9
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.7e-149 533.1 365 69.6
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.7e-149 531.9 368 70.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 8.3e-149 530.8 367 70.0
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.1e-148 530.4 373 71.0
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-148 529.6 370 71.4
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.8e-148 529.6 366 69.1
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.4e-148 529.3 334 76.9
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 4.1e-148 528.5 368 68.8
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.4e-148 528.1 365 71.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 7.0e-148 527.7 365 71.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.5e-147 525.4 370 70.8
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.3e-146 523.5 368 69.6
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-146 522.7 366 69.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.3e-146 522.7 366 69.7
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.3e-146 522.7 368 70.9
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.9e-146 522.3 366 70.5
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 5.0e-146 521.5 360 71.1
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.1e-145 520.4 365 68.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.1e-145 520.4 366 70.2
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.5e-145 520.0 366 69.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.9e-145 519.6 373 68.4
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.3e-145 518.8 386 66.1
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.5e-145 517.3 365 68.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.6e-144 516.5 366 70.2
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.8e-144 515.8 366 70.8
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.7e-144 515.0 365 67.7
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.1e-144 514.6 364 69.5
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.4e-143 513.5 366 69.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.8e-143 513.1 365 67.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.3e-143 512.7 364 72.5
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 3.1e-143 512.3 365 69.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 8.9e-143 510.8 362 69.9
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.2e-142 510.4 365 69.0
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-142 509.6 369 69.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.7e-141 506.5 366 68.3
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.2e-141 506.1 368 69.3
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.9e-141 505.8 367 69.2
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 6.4e-141 504.6 378 67.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 6.4e-141 504.6 369 69.4
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-140 503.8 368 69.0
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-140 503.8 368 69.0
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-139 500.4 366 69.1
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-139 500.0 370 69.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.6e-139 500.0 359 68.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.9e-138 495.4 329 75.7
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.3e-137 492.3 332 69.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 8.0e-136 487.6 386 63.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 6.8e-135 484.6 364 65.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.2e-134 483.8 354 66.1
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 5.4e-132 474.9 323 72.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.1e-128 461.1 328 70.7
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 5.8e-126 454.9 277 77.3
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.3e-125 453.8 327 67.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.6e-123 446.8 298 71.1
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-120 436.0 349 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.2e-118 430.6 284 70.1
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.3e-117 427.2 319 64.9
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-110 404.1 365 59.7
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.9e-108 396.7 244 75.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-107 392.9 336 62.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.3e-106 389.8 285 65.6
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.5e-105 387.1 282 65.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 5.8e-102 375.2 250 72.8
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 7.9e-99 364.8 290 59.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.1e-95 352.8 288 59.0
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 4.5e-94 349.0 255 69.0
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.3e-93 347.4 294 56.8
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.1e-87 326.2 290 57.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.8e-86 322.0 336 55.7
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.9e-77 293.1 168 83.3
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 7.4e-73 278.5 159 77.4
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 4.8e-64 249.2 229 54.6
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.6e-57 226.9 127 83.5
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 3.7e-56 223.0 129 75.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-55 221.5 280 47.5
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-48 197.6 148 64.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-43 180.6 148 61.5
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.7e-43 180.3 145 59.3
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-41 173.3 148 60.8
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.6e-38 164.5 95 72.6
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.5e-36 157.9 110 69.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 4.7e-35 152.9 148 52.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.9e-28 131.0 72 83.3
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.5e-20 104.8 64 76.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.5e-20 104.0 112 52.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 7.3e-20 102.4 57 77.2
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.7e-16 91.3 65 64.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-16 91.3 65 64.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 3.9e-13 80.1 46 69.6
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 8.6e-13 79.0 46 69.6
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-12 78.2 45 71.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.9e-12 77.8 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.6e-11 73.6 35 82.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.0e-09 67.8 57 57.9
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 40 80.0
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.2e-08 64.3 95 48.4
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 7.8e-06 55.8 45 51.1


User provided reference genes

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