Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.8e-51 204.1 98 100.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.1e-50 203.0 98 99.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 9.0e-50 199.9 98 96.9
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.1e-47 193.0 98 93.9
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.4e-47 192.6 98 91.8
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.9e-47 192.2 98 90.8
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.5e-44 181.8 98 86.7
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.3e-40 169.5 97 77.3
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.4e-39 166.0 98 76.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.4e-39 166.0 98 76.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-39 166.0 97 77.3
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 9.4e-39 163.3 98 75.5
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 2.1e-38 162.2 98 75.5
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.1e-38 162.2 97 75.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.6e-38 161.4 97 75.3
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.6e-38 161.0 97 74.2
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.1e-38 160.6 98 73.5
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 2.3e-37 158.7 98 75.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 5.1e-37 157.5 97 72.2
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 5.1e-37 157.5 98 72.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 5.1e-37 157.5 100 73.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.7e-37 157.1 89 79.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.1e-36 156.4 98 74.5
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.5e-36 155.2 90 77.8
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 3.3e-36 154.8 98 69.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 4.3e-36 154.5 96 71.9
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.3e-35 152.9 98 72.4
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.2e-35 152.1 98 72.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.7e-35 151.4 98 69.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.8e-35 151.0 98 69.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 6.3e-35 150.6 98 67.3
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-34 149.8 90 74.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.1e-34 149.8 98 72.4
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.4e-34 149.4 98 71.4
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.8e-34 149.1 98 72.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.8e-34 149.1 98 68.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.4e-34 148.7 92 71.7
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.1e-34 148.3 92 71.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.1e-34 148.3 92 71.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.1e-34 147.9 99 71.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 4.1e-34 147.9 98 71.4
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.1e-34 147.9 89 76.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 4.1e-34 147.9 97 71.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.3e-34 147.5 98 70.4
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 9.1e-34 146.7 90 73.3
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 9.1e-34 146.7 82 79.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-33 146.4 98 67.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.2e-33 146.4 92 70.7
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.6e-33 145.2 98 68.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 4.5e-33 144.4 91 69.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.9e-33 144.1 98 67.3
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 5.9e-33 144.1 88 75.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 7.7e-33 143.7 90 68.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.0e-32 143.3 90 67.8
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.0e-32 143.3 91 71.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.3e-32 142.9 91 69.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-32 142.5 90 71.1
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.7e-32 142.5 90 71.1
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.7e-32 142.5 96 70.8
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-32 142.1 91 69.2
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.2e-32 142.1 83 73.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.2e-32 142.1 95 67.4
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.9e-32 141.7 91 70.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-32 141.7 88 72.7
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.9e-32 141.7 98 66.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.8e-32 141.4 92 68.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.8e-32 141.4 88 71.6
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 5.0e-32 141.0 95 66.3
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-32 141.0 90 67.8
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 5.0e-32 141.0 90 67.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 5.0e-32 141.0 88 68.2
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.0e-32 141.0 83 75.9
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 5.0e-32 141.0 89 69.7
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 6.5e-32 140.6 90 67.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 6.5e-32 140.6 98 66.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.5e-32 140.6 90 67.8
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 6.5e-32 140.6 91 69.2
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.5e-32 140.6 90 67.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 8.5e-32 140.2 91 68.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 8.5e-32 140.2 90 67.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 8.5e-32 140.2 90 67.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 8.5e-32 140.2 91 69.2
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 8.5e-32 140.2 98 66.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 8.5e-32 140.2 88 71.6
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.5e-32 140.2 84 71.4
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 8.5e-32 140.2 97 68.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.1e-31 139.8 90 67.8
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-31 139.8 91 68.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.4e-31 139.4 87 72.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.9e-31 139.0 97 62.9
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.9e-31 139.0 88 70.5
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.5e-31 138.7 90 65.6
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 4.2e-31 137.9 98 64.3
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 4.2e-31 137.9 90 66.7
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.5e-31 137.5 87 69.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 5.5e-31 137.5 99 66.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 7.2e-31 137.1 84 71.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 9.4e-31 136.7 87 70.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 9.4e-31 136.7 98 65.3
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.4e-31 136.7 88 71.6
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 9.4e-31 136.7 98 69.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.2e-30 136.3 90 64.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-30 136.3 95 65.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.2e-30 136.3 94 68.1
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-30 136.0 87 71.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.6e-30 136.0 87 72.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.6e-30 136.0 90 67.8
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.6e-30 136.0 91 68.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.7e-30 135.2 82 73.2
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.6e-30 134.8 83 71.1
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.6e-30 134.8 99 64.6
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.9e-30 133.7 87 69.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-29 133.3 94 66.0
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.0e-29 133.3 82 73.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.0e-29 133.3 91 65.9
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.3e-29 132.1 82 74.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.0e-29 131.7 84 70.2
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.1e-29 131.0 88 65.9
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.1e-29 131.0 84 67.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.7e-29 130.6 98 64.3
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 8.8e-29 130.2 84 66.7
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.8e-29 130.2 84 66.7
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.8e-29 130.2 84 66.7
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.6e-28 128.6 87 64.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-28 128.6 84 67.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.3e-28 128.3 87 66.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.4e-28 127.9 84 65.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.7e-28 127.5 96 59.4
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.7e-28 127.5 83 72.3
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 5.7e-28 127.5 82 68.3
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 7.4e-28 127.1 81 70.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-27 126.3 87 65.5
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.7e-27 125.9 87 65.5
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-27 125.9 87 65.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-27 125.9 87 65.5
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-27 125.9 87 65.5
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.2e-27 125.6 83 71.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.2e-27 125.6 83 71.1
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-26 123.2 81 66.7
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.4e-26 122.9 86 67.4
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.8e-26 122.5 90 63.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.5e-25 118.2 98 61.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.2e-24 115.5 79 70.9
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 5.0e-24 114.4 63 82.5
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.6e-22 109.4 139 43.2
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 4.7e-22 107.8 61 80.3
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 4.4e-20 101.3 80 55.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.4e-18 95.5 57 80.7
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.6e-17 92.0 63 68.3
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.0e-16 87.8 89 52.8
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.2e-12 76.6 96 40.6
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.4e-10 68.9 67 50.7
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.1e-10 68.6 83 38.6
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-08 63.5 44 59.1
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 3.8e-08 61.6 64 45.3
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 5.0e-08 61.2 73 37.0
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.7e-06 55.5 74 35.1
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.7e-06 54.7 56 48.2


User provided reference genes

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