Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.9e-52 209.1 125 100.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 5.5e-36 154.5 96 100.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.6e-33 145.6 97 96.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.0e-30 136.0 96 89.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.3e-29 133.3 97 86.6
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.3e-29 132.5 97 83.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.7e-22 109.0 96 70.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.5e-22 108.6 96 70.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 6.0e-22 107.8 96 63.5
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 6.0e-22 107.8 96 63.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.0e-21 107.1 100 57.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.3e-21 106.7 99 69.7
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.3e-21 105.9 100 67.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.0e-21 105.5 101 58.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.0e-21 105.5 101 56.4
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 3.9e-21 105.1 105 66.7
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.0e-21 104.8 101 58.4
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 6.6e-21 104.4 102 66.7
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 8.6e-21 104.0 101 53.5
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 8.6e-21 104.0 101 53.5
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 8.6e-21 104.0 101 68.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-20 103.6 101 67.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.1e-20 103.6 96 69.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.1e-20 103.6 99 63.6
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.1e-20 103.6 96 54.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.5e-20 103.2 104 61.5
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-20 102.8 100 53.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.9e-20 102.8 96 69.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.5e-20 102.4 100 52.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.5e-20 102.4 101 68.3
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.5e-20 102.4 96 52.1
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 3.3e-20 102.1 102 62.7
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.3e-20 102.1 99 70.7
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.3e-20 102.1 99 54.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.3e-20 101.7 97 53.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 4.3e-20 101.7 99 52.5
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.6e-20 101.3 101 66.3
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 5.6e-20 101.3 100 55.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 7.3e-20 100.9 103 64.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.3e-20 100.9 103 67.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 7.3e-20 100.9 99 69.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 9.5e-20 100.5 106 67.0
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 9.5e-20 100.5 102 52.9
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 9.5e-20 100.5 107 52.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 9.5e-20 100.5 95 69.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.2e-19 100.1 104 70.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-19 100.1 97 69.1
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.6e-19 99.8 100 51.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.2e-19 97.8 97 67.0
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 6.2e-19 97.8 101 51.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 8.0e-19 97.4 100 67.0
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.1e-18 97.1 100 49.0
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.1e-18 97.1 104 49.0
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.1e-18 97.1 116 63.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.8e-18 96.3 106 50.0
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.8e-18 96.3 98 66.3
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.8e-18 96.3 98 66.3
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.8e-18 96.3 99 55.6
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.3e-18 95.9 100 66.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.1e-18 95.5 99 65.7
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.0e-18 95.1 102 68.6
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 4.0e-18 95.1 104 48.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 6.8e-18 94.4 96 57.3
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.9e-18 94.0 106 64.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.5e-17 93.2 101 62.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.5e-17 93.2 100 69.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.5e-17 93.2 102 62.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.4e-17 92.0 104 45.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.4e-17 92.0 100 65.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.4e-17 91.7 100 55.0
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 7.5e-17 90.9 102 58.8
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.5e-17 90.9 109 65.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 7.5e-17 90.9 106 47.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 9.8e-17 90.5 98 51.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 9.8e-17 90.5 98 51.0
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-16 90.1 104 64.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.7e-16 89.7 100 64.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.2e-16 89.4 100 62.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.2e-16 89.4 104 65.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.9e-16 89.0 123 41.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.9e-16 89.0 96 60.4
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.9e-16 89.0 96 51.0
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-16 89.0 105 47.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-16 88.6 107 57.9
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 4.9e-16 88.2 132 44.7
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.3e-16 87.4 103 65.0
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.1e-15 87.0 113 59.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.9e-15 86.3 100 45.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.9e-15 86.3 100 66.0
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-15 85.9 104 58.7
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.4e-15 85.9 100 66.0
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.2e-15 85.5 100 67.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.4e-15 84.7 96 62.5
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.4e-15 84.7 100 64.0
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.4e-15 84.7 99 65.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 5.4e-15 84.7 102 62.7
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 7.0e-15 84.3 100 66.0
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 7.0e-15 84.3 110 43.6
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-14 83.6 103 67.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.2e-14 83.6 122 58.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.6e-14 83.2 99 55.6
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-14 83.2 98 51.0
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.6e-14 83.2 96 63.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 4.6e-14 81.6 88 65.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.6e-14 81.6 99 64.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.6e-14 81.6 97 55.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.0e-14 81.3 47 78.7
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.0e-14 81.3 98 52.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 7.8e-14 80.9 101 57.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.0e-13 80.5 120 57.5
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-13 80.5 100 62.0
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.3e-13 80.1 97 59.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.7e-13 79.7 98 44.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.0e-13 79.0 47 70.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 3.0e-13 79.0 96 50.0
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.9e-13 78.6 129 51.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.9e-13 78.6 97 60.8
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.9e-13 78.6 94 59.6
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-12 77.0 109 47.7
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 3.3e-12 75.5 83 66.3
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.2e-11 73.6 109 45.9
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-11 73.6 109 45.9
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-11 73.6 109 45.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-11 73.6 91 58.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.8e-11 72.4 48 66.7
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.7e-11 71.6 109 45.9
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.7e-11 71.6 89 67.4
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.1e-10 70.5 47 66.0
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-10 69.3 107 41.1
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 6.8e-10 67.8 103 47.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 8.9e-10 67.4 135 43.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.3e-08 63.5 38 71.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.7e-08 63.2 118 40.7
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 2.2e-08 62.8 96 37.5
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.4e-07 60.1 131 42.0
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.4e-07 59.3 113 36.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 3.2e-07 58.9 35 71.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.2e-07 58.9 104 37.5
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.2e-07 58.9 128 44.5


User provided reference genes

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