Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 9.8e-281 969.5 510 100.0
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.3e-280 969.1 510 99.8
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.2e-278 962.6 510 98.8
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 5.7e-273 943.7 510 95.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 4.3e-268 927.5 510 94.3
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 3.6e-267 924.5 510 94.1
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 3.6e-259 897.9 510 90.0
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 1.4e-258 896.0 510 89.4
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 2.0e-257 892.1 510 88.8
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 2.6e-257 891.7 510 89.0
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 3.4e-257 891.3 510 89.6
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 9.8e-257 889.8 510 88.8
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 4.9e-256 887.5 510 89.8
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 6.4e-256 887.1 510 88.4
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 8.3e-256 886.7 510 89.2
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 8.3e-256 886.7 510 88.8
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.4e-255 885.9 510 89.2
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.4e-255 885.2 511 88.8
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.2e-255 884.8 510 88.4
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 88.6
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.4e-255 884.0 512 89.5
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 7.1e-255 883.6 511 88.8
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 88.4
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 88.6
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 2.1e-254 882.1 511 88.6
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 2.7e-254 881.7 510 88.6
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 7.8e-254 880.2 511 88.5
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 88.2
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 88.2
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.0e-253 878.2 511 89.0
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 87.6
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 88.4
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 88.0
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 87.6
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 87.5
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.1e-252 876.3 510 88.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.5e-252 875.9 510 86.5
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.9e-252 875.5 510 87.6
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 3.3e-252 874.8 510 87.6
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 4.3e-252 874.4 511 87.5
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 88.0
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 9.5e-252 873.2 511 87.5
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 87.6
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 86.9
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.1e-251 872.1 510 85.9
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 4.7e-251 870.9 511 86.7
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 6.2e-251 870.5 510 85.9
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 6.2e-251 870.5 511 87.3
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 86.3
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 87.6
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.8e-250 869.0 509 87.6
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.8e-250 869.0 510 86.1
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 86.7
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 86.7
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 8.9e-250 866.7 510 85.9
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.2e-249 866.3 510 86.1
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 85.3
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.0e-249 865.5 510 85.3
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 2.0e-249 865.5 510 87.1
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.0e-249 865.5 502 88.4
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 85.1
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 3.4e-249 864.8 511 86.9
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 3.4e-249 864.8 511 86.3
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.7e-248 862.4 510 86.1
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 2.2e-248 862.1 510 85.7
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 3.8e-248 861.3 510 86.3
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 85.3
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 85.1
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 8.4e-248 860.1 510 86.3
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 3.2e-247 858.2 510 85.3
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.1e-247 857.8 511 86.1
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 84.9
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 85.9
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 85.5
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 85.7
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 84.5
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 4.6e-246 854.4 527 84.4
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 85.7
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.7e-245 852.4 549 80.9
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 84.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 84.3
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.1
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.3
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.1
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.1
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 3.0e-245 851.7 510 84.3
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 6.6e-245 850.5 510 84.1
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 8.6e-245 850.1 510 86.3
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 83.9
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.9e-244 849.0 510 84.7
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.2e-243 846.3 511 85.1
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 2.1e-243 845.5 510 85.1
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 4.7e-243 844.3 510 84.9
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 85.3
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 84.1
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.5e-241 839.3 512 85.5
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.5e-241 839.3 510 83.3
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 3.4e-241 838.2 524 82.6
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 3.4e-241 838.2 511 84.0
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 4.4e-241 837.8 511 84.0
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 5.8e-241 837.4 510 83.5
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 86.9
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.9e-239 832.4 505 85.3
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.4e-239 830.9 511 83.4
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 9.3e-239 830.1 512 83.8
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.5e-238 828.2 510 82.7
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.5e-238 828.2 510 82.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.6e-238 827.8 510 82.5
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.0e-237 826.6 510 82.5
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.0e-237 826.6 511 83.4
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 8.7e-237 823.5 494 83.8
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 9.6e-236 820.1 494 84.8
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.6e-235 819.3 494 83.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 2.1e-235 818.9 492 83.9
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 8.1e-235 817.0 547 78.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.4e-234 816.2 494 85.6
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 2.0e-233 812.4 511 80.6
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.3e-232 809.7 472 87.5
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 5.4e-231 804.3 494 84.0
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 2.7e-230 802.0 556 76.6
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.5e-228 796.2 511 80.0
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 5.6e-228 794.3 511 79.1
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 2.6e-225 785.4 512 80.9
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 5.8e-225 784.3 512 80.1
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.5e-223 777.7 524 77.9
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.5e-223 777.7 524 77.9
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 9.3e-223 776.9 511 77.5
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.9e-222 773.9 510 78.8
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.6e-211 739.6 440 84.8
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.3e-205 719.9 472 81.1
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 2.8e-203 712.2 511 74.6
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.6e-198 694.9 510 73.5
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 4.6e-198 694.9 413 85.7
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 6.1e-198 694.5 503 73.0
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 3.8e-192 675.2 514 66.3
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-187 659.1 503 67.6
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 3.0e-181 639.0 468 71.6
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 2.2e-176 622.9 375 83.5
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 4.7e-174 615.1 365 86.8
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.1e-174 614.8 514 60.5
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 7.5e-172 607.8 364 85.7
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 5.4e-170 601.7 522 60.3
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.6e-169 600.1 379 82.1
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 3.8e-168 595.5 504 66.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-167 593.6 494 59.9
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 6.8e-165 584.7 511 58.3
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.6e-161 573.5 325 91.7
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.7e-161 572.8 347 84.7
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.4e-155 551.6 499 55.1
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.3e-151 538.9 457 67.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.2e-147 526.6 307 88.6
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.7e-142 508.8 284 92.6
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 6.4e-131 471.9 383 61.6
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.0e-121 438.7 254 87.4
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 5.3e-117 425.6 513 46.8
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.1e-114 417.9 245 89.0
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.4e-109 400.2 386 54.9
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 5.1e-104 382.5 486 43.4
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.8e-100 369.0 267 73.4
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 3.9e-96 356.3 520 37.7
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.4e-84 316.6 199 84.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.4e-74 284.6 343 46.9
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 6.5e-67 259.2 503 38.0
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.7e-59 234.6 289 46.7
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.9e-59 233.8 144 83.3
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 5.2e-56 223.0 368 40.8
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 4.0e-48 196.8 117 82.9
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.9e-46 189.9 143 73.4
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-46 189.9 206 51.9
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-43 182.2 197 51.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 1.2e-31 142.1 394 32.0
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.5e-31 139.4 119 56.3
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 5.4e-29 133.3 87 80.5
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 1.4e-21 108.6 121 59.5
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.0e-11 75.9 64 60.9
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 4.3e-10 70.5 39 87.2
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 6.2e-09 66.6 37 86.5
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 8.4e-06 56.2 38 71.1


User provided reference genes

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