Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 5.0e-69 264.6 165 100.0
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 6.1e-67 257.7 165 98.2
Sopen00g009740 Solanum pennellii HOM05D003440 ORTHO05D003953 4.3e-52 208.4 152 91.4
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.2e-49 200.3 144 83.3
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 4.2e-15 85.5 41 78.0
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 5.5e-15 85.1 41 78.0
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 5.5e-15 85.1 40 85.0
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.2e-14 84.0 38 86.8
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.6e-14 83.6 40 80.0
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 4.6e-14 82.0 39 79.5
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 4.6e-14 82.0 37 86.5
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 6.0e-14 81.6 39 82.1
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.0e-13 80.9 39 79.5
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-13 80.5 37 86.5
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-13 80.5 37 86.5
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.3e-13 80.5 37 86.5
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.8e-13 80.1 40 75.0
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.8e-13 80.1 38 84.2
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 3.0e-13 79.3 35 88.6
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.7e-13 78.2 39 74.4
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 6.7e-13 78.2 40 70.0
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 8.7e-13 77.8 38 76.3
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 1.1e-12 77.4 38 78.9
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 1.1e-12 77.4 38 76.3
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.1e-12 77.4 35 85.7
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.5e-12 77.0 35 82.9
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.5e-12 77.0 35 82.9
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.5e-12 77.0 38 78.9
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.5e-12 77.0 37 78.4
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 2.5e-12 76.3 37 81.1
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 2.5e-12 76.3 37 78.4
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 3.3e-12 75.9 37 78.4
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 7.4e-12 74.7 37 75.7
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 7.4e-12 74.7 36 80.6
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 9.6e-12 74.3 35 80.0
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 9.6e-12 74.3 37 78.4
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.3e-11 73.9 37 75.7
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 1.6e-11 73.6 38 71.1
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.8e-11 72.8 40 65.0
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 3.7e-11 72.4 37 73.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.4e-10 69.7 37 67.6
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 3.1e-10 69.3 36 69.4
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.9e-10 68.2 35 71.4
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 6.9e-10 68.2 40 55.0
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 6.9e-10 68.2 40 55.0
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 1.5e-09 67.0 38 68.4
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 3.4e-09 65.9 40 60.0
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 7.6e-09 64.7 38 65.8
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 3.8e-08 62.4 34 58.8
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 4.9e-08 62.0 37 64.9
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-08 61.6 34 61.8
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 6.5e-08 61.6 34 61.8
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 6.5e-08 61.6 34 61.8
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 6.5e-08 61.6 34 61.8
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 8.4e-08 61.2 37 59.5
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 55.9
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 58.8
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 1.4e-07 60.5 34 55.9
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 1.9e-07 60.1 34 58.8
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 1.9e-07 60.1 34 58.8
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 1.9e-07 60.1 34 58.8
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.9e-07 60.1 34 58.8
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 1.9e-07 60.1 35 57.1
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 2.5e-07 59.7 34 58.8
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 2.5e-07 59.7 37 56.8
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 2.5e-07 59.7 34 58.8
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 2.5e-07 59.7 36 55.6
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 2.5e-07 59.7 34 55.9
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 2.5e-07 59.7 36 55.6
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 3.2e-07 59.3 34 55.9
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 3.2e-07 59.3 34 55.9
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 4.2e-07 58.9 39 59.0
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 4.2e-07 58.9 39 59.0
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 4.2e-07 58.9 34 55.9
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 4.2e-07 58.9 36 52.8
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 4.2e-07 58.9 35 54.3
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 5.5e-07 58.5 34 55.9
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 7.1e-07 58.2 34 55.9
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 7.1e-07 58.2 34 58.8
CARHR212370 Cardamine hirsuta HOM05D003440 ORTHO05D003953 9.3e-07 57.8 37 59.5
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 9.3e-07 57.8 34 55.9
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 9.3e-07 57.8 34 52.9
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 9.3e-07 57.8 34 58.8
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.2e-06 57.4 34 52.9
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 52.9
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 52.9
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 52.9
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 52.9
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 55.9
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 52.9
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.6e-06 57.0 34 55.9
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 2.1e-06 56.6 34 52.9
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 2.1e-06 56.6 35 60.0
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 2.1e-06 56.6 34 52.9
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 2.1e-06 56.6 34 52.9
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.1e-06 56.6 34 52.9
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.1e-06 56.6 34 52.9
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 2.7e-06 56.2 34 52.9
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.5e-06 55.8 40 52.5
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.5e-06 55.8 40 52.5
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.6e-06 55.5 34 50.0
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.6e-06 55.5 34 50.0
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 4.6e-06 55.5 34 50.0
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 4.6e-06 55.5 34 50.0
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 6.0e-06 55.1 34 50.0
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 7.9e-06 54.7 38 50.0


User provided reference genes

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