Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 0.0e+00 1656.3 827 100.0
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 0.0e+00 1605.9 828 97.8
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 3.3e-294 1015.0 820 67.7
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.2e-222 777.3 836 56.5
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 6.9e-175 618.6 839 49.7
Nitab4.5_0001946g0060 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.2e-139 501.5 556 53.8
PGSC0003DMG401006272 Solanum tuberosum HOM05D014625 ORTHO05D007630 5.3e-135 486.1 287 87.5
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 3.3e-60 237.7 865 30.6
Nitab4.5_0000734g0140 Nicotiana tabacum HOM05D014625 ORTHO05D007630 4.5e-57 227.3 241 55.2
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 9.3e-47 193.0 867 28.7
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 2.2e-40 171.8 852 29.1
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 5.1e-37 160.6 883 27.9
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 6.3e-35 153.7 701 26.4
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 8.2e-35 153.3 856 27.0
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 1.1e-31 142.9 801 27.0
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 3.2e-31 141.4 531 31.5
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 2.1e-30 138.7 620 29.4
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 4.6e-30 137.5 873 26.5
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 3.0e-29 134.8 726 25.9
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 2.5e-28 131.7 873 27.7
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 8.2e-27 126.7 646 27.9
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 8.2e-27 126.7 427 31.9
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 1.1e-26 126.3 874 26.5
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 2.4e-26 125.2 620 26.1
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 2.4e-26 125.2 461 30.4
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 1.2e-25 122.9 615 29.1
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 1.5e-25 122.5 499 29.9
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 2.6e-25 121.7 581 28.6
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 8.5e-24 116.7 252 40.9
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 2.5e-23 115.2 306 33.3
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 3.2e-23 114.8 862 26.2
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 5.5e-23 114.0 615 28.3
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 1.2e-22 112.8 846 25.2
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 1.6e-22 112.5 884 25.1
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 2.3e-21 108.6 815 25.8
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 2.3e-21 108.6 869 25.4
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 1.5e-20 105.9 580 27.4
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 2.0e-20 105.5 512 27.9
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 5.7e-20 104.0 339 32.7
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 9.7e-20 103.2 140 40.7
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 1.3e-19 102.8 428 29.7
PGSC0003DMG402006272 Solanum tuberosum HOM05D014625 ORTHO05D007630 2.2e-19 102.1 61 83.6
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 3.7e-19 101.3 415 30.1
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 4.8e-19 100.9 270 34.4
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 8.2e-19 100.1 641 25.0
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 1.1e-18 99.8 567 27.3
Nitab4.5_0000734g0160 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.2e-17 96.3 81 63.0
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 1.2e-17 96.3 437 27.2
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 2.6e-17 95.1 831 26.6
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 3.4e-17 94.7 844 24.6
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 2.2e-16 92.0 276 34.8
Hma1.2p1_0119F.1_g056956 Hydrangea macrophylla HOM05D007641 ORTHO05D007630 1.1e-15 89.7 456 28.5
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 1.4e-15 89.4 575 26.4
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 2.5e-15 88.6 232 36.2
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 2.7e-14 85.1 254 32.7
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 3.6e-14 84.7 578 26.0
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 3.6e-14 84.7 209 36.8
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 8.0e-14 83.6 536 24.4
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 5.2e-13 80.9 660 25.3
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 5.7e-12 77.4 661 25.4
HPP92_015425 Vanilla planifolia HOM05D007641 ORTHO05D007630 5.7e-12 77.4 540 24.4
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 7.4e-12 77.0 866 22.9
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 9.7e-12 76.6 229 35.8
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 2.2e-11 75.5 571 25.6
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 3.7e-11 74.7 224 32.6
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 4.8e-11 74.3 835 23.6
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 8.2e-11 73.6 251 29.9
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 8.2e-11 73.6 121 42.1
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 1.8e-10 72.4 517 24.4
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 3.1e-10 71.6 299 29.4
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 5.3e-10 70.9 241 32.8
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 2.0e-09 68.9 802 24.8
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 2.0e-09 68.9 266 30.1
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 2.6e-09 68.6 265 31.3
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 3.5e-09 68.2 735 23.0
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 4.5e-09 67.8 169 32.0
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 5.9e-09 67.4 704 23.9
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 7.7e-09 67.0 256 28.9
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 7.7e-09 67.0 91 45.1
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 1.0e-08 66.6 162 34.0
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 2.2e-08 65.5 378 25.7
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 2.9e-08 65.1 231 31.6
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 3.8e-08 64.7 98 40.8
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 5.0e-08 64.3 266 29.7
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 1.9e-07 62.4 95 36.8
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 4.2e-07 61.2 133 31.6
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 9.4e-07 60.1 230 32.6
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 9.4e-07 60.1 230 30.4
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 9.4e-07 60.1 395 26.3
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 9.4e-07 60.1 136 37.5
Zm00001eb336420 Zea mays HOM05D052079 ORTHO05D007630 9.4e-07 60.1 247 27.9
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 4.7e-06 57.8 200 34.5
Lj2A1102G26 Lonicera japonica HOM05D007641 ORTHO05D007630 6.1e-06 57.4 331 27.8


User provided reference genes

Program Settings