Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 7.0e-41 170.2 89 100.0
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 1.0e-39 166.4 89 95.5
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 9.4e-38 159.8 89 97.8
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 4.0e-28 127.9 87 75.9
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 4.0e-28 127.9 86 76.7
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 5.2e-28 127.5 90 77.8
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 5.7e-27 124.0 89 74.2
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 7.5e-27 123.6 85 72.9
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 9.7e-27 123.2 86 73.3
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 1.7e-26 122.5 89 70.8
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 2.8e-26 121.7 89 71.9
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 6.3e-26 120.6 85 71.8
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 1.4e-25 119.4 88 70.5
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 1.2e-24 116.3 86 66.3
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 7.7e-24 113.6 86 67.4
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 1.0e-23 113.2 85 65.9
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 1.3e-23 112.8 80 72.5
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 1.7e-23 112.5 85 68.2
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 1.7e-23 112.5 85 68.2
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 1.9e-22 109.0 88 69.3
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 1.9e-22 109.0 88 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 1.2e-21 106.3 86 59.3
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 3.6e-21 104.8 89 70.8
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 1.8e-20 102.4 86 58.1
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 5.2e-20 100.9 89 57.3
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 6.8e-20 100.5 125 48.0
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 1.2e-19 99.8 86 61.6
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 1.5e-19 99.4 86 62.8
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 1.5e-19 99.4 89 60.7
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 2.6e-19 98.6 86 64.0
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 9.8e-19 96.7 86 55.8
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 3.7e-18 94.7 109 47.7
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 2.7e-16 88.6 67 68.7
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 2.7e-16 88.6 77 54.5
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 5.0e-15 84.3 74 63.5
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 6.6e-15 84.0 75 53.3
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 1.1e-14 83.2 89 50.6
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.5e-14 82.8 88 51.1
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.9e-14 82.4 88 51.1
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.5e-14 82.0 142 36.6
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 3.3e-14 81.6 75 52.0
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 3.3e-14 81.6 83 53.0
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 3.3e-14 81.6 48 81.2
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 5.5e-14 80.9 86 57.0
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 9.5e-14 80.1 86 52.3
Nitab4.5_0000357g0300 Nicotiana tabacum HOM05D007599 ORTHO05D009548 9.5e-14 80.1 89 57.3
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 2.1e-13 79.0 81 51.9
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 2.1e-13 79.0 47 76.6
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 2.8e-13 78.6 86 54.7
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 2.8e-13 78.6 85 43.5
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 2.8e-13 78.6 85 55.3
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 2.8e-13 78.6 86 55.8
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 8.0e-13 77.0 60 55.0
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 8.0e-13 77.0 88 53.4
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 2.3e-12 75.5 63 47.6
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 6.8e-12 73.9 89 49.4
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 1.2e-11 73.2 86 55.8
TWI81G0432 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 1.2e-11 73.2 85 55.3
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 1.5e-11 72.8 86 53.5
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 1.5e-11 72.8 86 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 2.0e-11 72.4 86 45.3
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 4.4e-11 71.2 85 48.2
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 9.8e-11 70.1 81 49.4
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 9.8e-11 70.1 89 48.3
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 9.8e-11 70.1 89 48.3
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.3e-10 69.7 81 48.1
TWI60G1211 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 3.7e-10 68.2 85 52.9
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 6.3e-10 67.4 89 53.9
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 1.1e-09 66.6 88 48.9
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 1.1e-09 66.6 46 63.0
Haze_09213 Corylus avellana HOM05D007599 ORTHO05D009548 1.8e-09 65.9 86 47.7
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 9.2e-09 63.5 87 46.0
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 1.2e-08 63.2 88 43.2
C06p32780 Brassica napus HOM05D007599 ORTHO05D009548 2.0e-08 62.4 88 43.2
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 2.7e-08 62.0 64 54.7
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 5.9e-08 60.8 85 43.5
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 5.9e-08 60.8 85 43.5
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 5.9e-08 60.8 85 43.5
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 7.8e-08 60.5 37 78.4
BolC6t38400H Brassica oleracea HOM05D007599 ORTHO05D009548 1.0e-07 60.1 88 42.0
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 1.7e-07 59.3 88 46.6
A07p29010 Brassica napus HOM05D007599 ORTHO05D009548 2.9e-07 58.5 88 42.0
BraA07t30541Z Brassica rapa HOM05D007599 ORTHO05D009548 2.9e-07 58.5 88 42.0
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 6.6e-07 57.4 87 46.0
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 6.6e-07 57.4 87 46.0
Nitab4.5_0002520g0020 Nicotiana tabacum HOM05D007599 ORTHO05D009548 1.1e-06 56.6 89 48.3
Aa31LG9G70 Aethionema arabicum HOM05D007599 ORTHO05D009548 1.5e-06 56.2 89 46.1
BcaNung06629 Brassica carinata HOM05D007599 ORTHO05D009548 1.5e-06 56.2 89 43.8
BcaB02g07013 Brassica carinata HOM05D007599 ORTHO05D009548 3.3e-06 55.1 89 42.7
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 4.3e-06 54.7 64 35.9


User provided reference genes

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