Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g083290.4 Solanum lycopersicum HOM05D005424 ORTHO05D006726 0.0e+00 1519.6 815 100.0
Sopen08g031500 Solanum pennellii HOM05D005424 ORTHO05D006726 0.0e+00 1390.2 933 83.9
Nitab4.5_0002520g0100 Nicotiana tabacum HOM05D005424 ORTHO05D006726 0.0e+00 1080.1 860 73.5
Nitab4.5_0003419g0090 Nicotiana tabacum HOM05D005424 ORTHO05D006726 0.0e+00 1077.8 941 67.9
CAN.G567.102 Capsicum annuum HOM05D005424 ORTHO05D006726 0.0e+00 1075.1 900 70.6
Peaxi162Scf00074g00151 Petunia axillaris HOM05D005424 ORTHO05D006726 1.2e-304 1049.7 816 74.6
PGSC0003DMG402012227 Solanum tuberosum HOM05D005424 ORTHO05D006726 6.0e-272 941.0 748 74.3
Dinv12891 Davidia involucrata HOM05D005424 ORTHO05D006726 1.6e-160 570.9 684 54.7
Dinv18754 Davidia involucrata HOM05D005424 ORTHO05D006726 8.6e-138 495.4 669 51.9
Rhsim07G0076500 Rhododendron simsii HOM05D005424 ORTHO05D006726 2.6e-134 483.8 701 48.5
CSS0028831 Camellia sinensis var. sinensis HOM05D005424 ORTHO05D006726 1.6e-131 474.6 736 46.1
vmacro13840 Vaccinium macrocarpon HOM05D005424 ORTHO05D006726 5.1e-130 469.5 686 49.0
Cc08_g16940 Coffea canephora HOM05D005424 ORTHO05D006726 1.1e-129 468.4 666 49.8
GSVIVG01019675001 Vitis vinifera HOM05D005424 ORTHO05D006726 1.9e-129 467.6 799 43.9
COL.COLO4_10822 Corchorus olitorius HOM05D005424 ORTHO05D006726 1.3e-128 464.9 642 48.8
Cfa011902 Carpinus fangiana HOM05D005424 ORTHO05D006726 2.4e-127 460.7 666 48.3
Thecc.03G218200 Theobroma cacao HOM05D005424 ORTHO05D006726 5.3e-127 459.5 653 49.3
Gohir.A12G241300 Gossypium hirsutum HOM05D005424 ORTHO05D006726 1.7e-125 454.5 628 49.4
CiPaw.11G110500 Carya illinoinensis HOM05D005424 ORTHO05D006726 3.8e-125 453.4 791 43.5
Gorai.008G259800 Gossypium raimondii HOM05D005424 ORTHO05D006726 1.0e-122 445.3 622 48.7
QL02p027371 Quercus lobata HOM05D005424 ORTHO05D006726 1.3e-122 444.9 649 48.1
Gohir.D12G242600 Gossypium hirsutum HOM05D005424 ORTHO05D006726 1.5e-121 441.4 617 48.5
Potri.011G152600 Populus trichocarpa HOM05D005424 ORTHO05D006726 1.3e-120 438.3 780 44.4
Potri.001G448900 Populus trichocarpa HOM05D005424 ORTHO05D006726 1.1e-119 435.3 658 48.8
TAR636G1325 Trochodendron aralioides HOM05D005424 ORTHO05D006726 4.0e-119 433.3 510 53.9
Ciclev10018587m.g Citrus clementina HOM05D005424 ORTHO05D006726 1.5e-118 431.4 651 48.2
MSTRG.13701 Avicennia marina HOM05D005424 ORTHO05D006726 2.0e-118 431.0 576 50.5
Duzib205G0106 Durio zibethinus HOM05D005424 ORTHO05D006726 6.4e-117 426.0 585 51.1
Atru.chr9.1859 Acer truncatum HOM05D005424 ORTHO05D006726 1.2e-115 421.8 664 46.8
Sabra16G0303000 Salix brachista HOM05D005424 ORTHO05D006726 2.7e-115 420.6 635 48.3
Sabra11G0148200 Salix brachista HOM05D005424 ORTHO05D006726 5.1e-114 416.4 655 47.3
TWI81G0285 Tripterygium wilfordii HOM05D005424 ORTHO05D006726 1.9e-113 414.5 653 46.7
Glyma.10G172500 Glycine max HOM05D005424 ORTHO05D006726 1.2e-110 405.2 669 46.9
Cpa.g.sc37.92 Carica papaya HOM05D005424 ORTHO05D006726 1.1e-108 398.7 626 46.0
Migut.E00727 Erythranthe guttata HOM05D005424 ORTHO05D006726 2.7e-107 394.0 807 41.9
Oeu010728.1 Olea europaea HOM05D005424 ORTHO05D006726 2.7e-107 394.0 540 49.3
Manes.01G055600 Manihot esculenta HOM05D005424 ORTHO05D006726 4.6e-107 393.3 733 42.0
Prupe.5G132500 Prunus persica HOM05D005424 ORTHO05D006726 4.6e-107 393.3 697 43.6
VMungo0720G0206 Vigna mungo HOM05D005424 ORTHO05D006726 7.9e-107 392.5 563 50.3
CANSAT21G2321 Cannabis sativa HOM05D005424 ORTHO05D006726 1.8e-106 391.3 892 38.1
FvH4_5g10620 Fragaria vesca HOM05D005424 ORTHO05D006726 2.3e-106 391.0 665 44.8
arahy.Tifrunner.gnm1.ann1.BAML4E Arachis hypogaea HOM05D005424 ORTHO05D006726 8.7e-106 389.0 665 44.7
Duzib068G1314 Durio zibethinus HOM05D005424 ORTHO05D006726 1.5e-105 388.3 642 45.2
Lj2A154T41 Lonicera japonica HOM05D005424 ORTHO05D006726 7.4e-105 386.0 748 43.4
Nn7g38300 Nelumbo nucifera HOM05D005424 ORTHO05D006726 1.6e-104 384.8 706 43.5
Lj5g0003487 Lotus japonicus HOM05D005424 ORTHO05D006726 2.8e-104 384.0 685 43.8
MD06G1121800 Malus domestica HOM05D005424 ORTHO05D006726 1.4e-103 381.7 656 44.4
FAN13G2865 Fragaria x ananassa HOM05D005424 ORTHO05D006726 1.8e-103 381.3 802 40.3
Glyma.20G217700 Glycine max HOM05D005424 ORTHO05D006726 1.8e-103 381.3 664 45.0
Ca_09953_v3 Cicer arietinum L. HOM05D005424 ORTHO05D006726 4.1e-103 380.2 771 40.6
FAN18G4434 Fragaria x ananassa HOM05D005424 ORTHO05D006726 1.0e-101 375.6 690 43.0
Psat6g052720 Pisum sativum HOM05D005424 ORTHO05D006726 5.5e-100 369.8 670 43.6
Haze_09196 Corylus avellana HOM05D005424 ORTHO05D006726 7.2e-100 369.4 668 43.3
RcHm_v2.0_Chr7g0187521 Rosa chinensis HOM05D005424 ORTHO05D006726 9.3e-100 369.0 658 43.8
FAN08G3416 Fragaria x ananassa HOM05D005424 ORTHO05D006726 4.6e-99 366.7 664 43.7
Eucgr.D01670 Eucalyptus grandis HOM05D005424 ORTHO05D006726 1.0e-98 365.5 752 41.5
Aqoxy7G00007 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 1.8e-98 364.8 592 46.5
Lalb_Chr21g0311581 Lupinus albus HOM05D005424 ORTHO05D006726 2.3e-98 364.4 649 43.8
MBI12_g14812_MAGBIO Magnolia biondii HOM05D005424 ORTHO05D006726 3.9e-98 363.6 810 40.0
Lalb_Chr21g0311601 Lupinus albus HOM05D005424 ORTHO05D006726 8.7e-98 362.5 640 44.4
PSO063G2765 Papaver somniferum HOM05D005424 ORTHO05D006726 8.7e-98 362.5 834 38.7
PSO782G1858 Papaver somniferum HOM05D005424 ORTHO05D006726 1.5e-97 361.7 836 38.4
ClCG08G001970 Citrullus lanatus HOM05D005424 ORTHO05D006726 5.3e-95 353.2 610 46.1
CsaV3_6G002490 Cucumis sativus L. HOM05D005424 ORTHO05D006726 5.3e-95 353.2 587 46.3
MELO3C025037.2 Cucumis melo HOM05D005424 ORTHO05D006726 6.9e-95 352.8 587 45.8
Sc01g0010800 Simmondsia chinensis HOM05D005424 ORTHO05D006726 6.9e-95 352.8 726 41.5
SGA_v2.0_scaffold88G27243 Striga asiatica HOM05D005424 ORTHO05D006726 6.9e-95 352.8 729 40.5
ECA233G6131 Erigeron canadensis HOM05D005424 ORTHO05D006726 1.5e-94 351.7 794 39.9
Phvul.L004801 Phaseolus vulgaris HOM05D005424 ORTHO05D006726 3.4e-94 350.5 720 41.8
Medtr1g077940 Medicago truncatula HOM05D005424 ORTHO05D006726 1.0e-93 349.0 503 48.7
EL10Ac5g12404 Beta vulgaris HOM05D005424 ORTHO05D006726 2.9e-93 347.4 666 42.6
THA.LOC104806458 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 1.4e-92 345.1 592 44.8
THA.LOC104813063 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 7.2e-92 342.8 622 43.7
Hund11337 Selenicereus undatus HOM05D005424 ORTHO05D006726 2.7e-91 340.9 596 44.1
HanXRQChr07g0192271 Helianthus annuus HOM05D005424 ORTHO05D006726 5.7e-89 333.2 612 44.3
PGR031G0320 Punica granatum HOM05D005424 ORTHO05D006726 2.4e-87 327.8 716 39.1
Lsat_1_v5_gn_6_11441 Lactuca sativa HOM05D005424 ORTHO05D006726 5.5e-84 316.6 837 38.0
DCAR_009582 Daucus carota HOM05D005424 ORTHO05D006726 2.3e-82 311.2 564 43.3
AUR62007075 Chenopodium quinoa HOM05D005424 ORTHO05D006726 7.7e-78 296.2 565 43.4
AUR62019939 Chenopodium quinoa HOM05D005424 ORTHO05D006726 2.1e-75 288.1 632 39.7
Ah.07g198200 Amaranthus hybridus HOM05D005424 ORTHO05D006726 1.7e-72 278.5 577 41.1
unitig_699.g19549 Utricularia gibba HOM05D005424 ORTHO05D006726 1.3e-69 268.9 621 40.4
Sp1g28160 Schrenkiella parvula HOM05D005424 ORTHO05D006726 1.9e-68 265.0 525 42.7
BcaB04g17977 Brassica carinata HOM05D005424 ORTHO05D006726 7.2e-68 263.1 762 33.7
CARHR032180 Cardamine hirsuta HOM05D005424 ORTHO05D006726 1.6e-67 261.9 738 37.0
Thhalv10006636m.g Eutrema salsugineum HOM05D005424 ORTHO05D006726 3.0e-66 257.7 619 40.1
Aa31LG6G7470 Aethionema arabicum HOM05D005424 ORTHO05D006726 3.4e-65 254.2 498 42.2
Carub.0001s3113 Capsella rubella HOM05D005424 ORTHO05D006726 3.4e-65 254.2 610 38.9
AL1G47110 Arabidopsis lyrata HOM05D005424 ORTHO05D006726 7.7e-62 243.0 834 32.7
Sed0006250 Sechium edule HOM05D005424 ORTHO05D006726 1.3e-61 242.3 632 36.2
A08p09200 Brassica napus HOM05D005424 ORTHO05D006726 2.7e-59 234.6 713 33.8
Ah.12g053330 Amaranthus hybridus HOM05D001091 ORTHO05D001020 6.1e-59 233.4 507 39.4
BolC8t47971H Brassica oleracea HOM05D005424 ORTHO05D006726 8.0e-59 233.0 710 33.4
BcaC07g37610 Brassica carinata HOM05D005424 ORTHO05D006726 1.5e-57 228.8 762 32.3
DCAR_019998 Daucus carota HOM05D005424 ORTHO05D006726 2.0e-57 228.4 357 47.9
Aqoxy8s003 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 2.6e-57 228.0 324 49.4
AT1G32810 Arabidopsis thaliana HOM05D005424 ORTHO05D006726 3.7e-56 224.2 659 36.3
BraA08t32921Z Brassica rapa HOM05D005424 ORTHO05D006726 1.1e-52 212.6 790 31.3
TAR374G0493 Trochodendron aralioides HOM05D005424 ORTHO05D006726 1.9e-52 211.8 249 54.6
SEGI_18929 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 4.0e-50 204.1 752 32.4
CDE11G1187 Ceratophyllum demersum HOM05D005424 ORTHO05D006726 1.1e-47 196.1 834 29.7
SHI06919 Sapria himalayana HOM05D005424 ORTHO05D006726 3.3e-44 184.5 272 45.6
HPP92_001577 Vanilla planifolia HOM05D005424 ORTHO05D006726 5.6e-44 183.7 501 36.9
PGSC0003DMG401012227 Solanum tuberosum HOM05D005424 ORTHO05D006726 1.3e-40 172.6 96 100.0
TPR.G34809 Trifolium pratense HOM05D005424 ORTHO05D006726 1.4e-39 169.1 430 38.6
Oeu038526.1 Olea europaea HOM05D000700 ORTHO05D000397 7.0e-39 166.8 316 39.6
TPR.G34808 Trifolium pratense HOM05D005424 ORTHO05D006726 2.7e-38 164.9 147 63.3
Os04g0221600 Oryza sativa ssp. japonica HOM05D005424 ORTHO05D006726 2.1e-35 155.2 471 33.8
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.4e-26 125.9 858 27.0
Mapoly0057s0069 Marchantia polymorpha HOM05D005424 ORTHO05D006726 1.7e-21 109.0 815 27.5
ATR0078G022 Amborella trichopoda HOM05D005424 ORTHO05D006726 3.0e-21 108.2 566 29.9
SEGI_29779 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 3.2e-15 88.2 184 37.0
TAR374G0151 Trochodendron aralioides HOM05D005424 ORTHO05D006726 8.1e-11 73.6 184 37.0


User provided reference genes

Program Settings