Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 3.5e-164 581.6 312 100.0
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 6.2e-161 570.9 312 98.4
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 7.9e-140 500.7 311 88.1
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 1.6e-132 476.5 315 84.1
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 2.3e-131 472.6 258 98.1
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 5.1e-123 444.9 319 78.4
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 7.5e-98 361.3 290 72.4
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 2.1e-92 343.2 274 68.2
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 2.7e-92 342.8 301 64.5
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 8.0e-92 341.3 272 65.8
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.0e-91 340.9 319 61.1
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 1.8e-91 340.1 313 62.0
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.3e-91 339.7 318 61.6
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 4.0e-91 339.0 305 63.3
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.2e-90 337.4 323 59.8
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 3.4e-90 335.9 313 61.3
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 3.7e-89 332.4 330 58.2
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 6.3e-89 331.6 306 60.5
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 6.3e-89 331.6 322 60.2
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 1.8e-88 330.1 305 62.3
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 3.1e-88 329.3 285 62.8
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 5.4e-88 328.6 311 59.8
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 5.9e-87 325.1 307 59.9
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 5.9e-87 325.1 246 69.5
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.0e-86 324.3 258 67.1
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 1.3e-86 323.9 308 59.4
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 2.9e-86 322.8 321 58.3
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.1e-85 320.9 256 67.6
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 4.2e-85 318.9 272 62.1
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 5.5e-85 318.5 308 58.8
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 7.2e-85 318.2 248 66.5
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 3.6e-84 315.8 309 59.5
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 8.8e-83 311.2 300 58.7
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 1.2e-82 310.8 299 61.9
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.5e-82 310.5 308 58.8
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 2.6e-82 309.7 277 61.7
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 4.4e-82 308.9 317 57.7
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 4.4e-82 308.9 257 65.0
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 7.5e-82 308.1 287 59.2
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 2.2e-81 306.6 303 56.4
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 4.9e-81 305.4 279 59.9
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 6.3e-81 305.1 258 64.7
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 1.1e-80 304.3 250 64.4
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.4e-80 303.9 244 66.4
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 5.4e-80 302.0 315 58.4
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 7.0e-80 301.6 278 60.8
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 2.7e-79 299.7 268 63.8
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 4.5e-79 298.9 271 63.1
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.9e-79 298.5 323 54.8
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 7.8e-79 298.1 310 56.5
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 6.6e-78 295.0 295 58.0
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 6.6e-78 295.0 291 59.5
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.9e-77 293.5 248 63.3
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 5.6e-77 292.0 275 60.4
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 9.5e-77 291.2 258 60.5
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 1.2e-76 290.8 263 59.3
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 3.6e-76 289.3 297 56.2
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 4.7e-76 288.9 258 58.9
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 4.7e-76 288.9 258 58.9
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 4.7e-76 288.9 258 58.9
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 8.0e-76 288.1 277 56.7
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.0e-75 287.7 295 53.9
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.0e-75 287.7 258 58.9
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.4e-75 287.3 275 59.6
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 1.8e-75 287.0 275 59.3
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.3e-75 286.6 314 55.4
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 2.3e-75 286.6 296 57.1
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 5.2e-75 285.4 296 54.4
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 8.9e-75 284.6 309 53.7
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 1.2e-74 284.3 270 57.8
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.5e-74 283.9 258 59.3
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 9.8e-74 281.2 319 52.0
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.7e-73 280.4 258 58.5
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 1.7e-73 280.4 317 53.0
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 8.3e-73 278.1 255 59.2
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 1.4e-72 277.3 264 59.5
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 1.4e-72 277.3 262 57.6
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 1.2e-71 274.2 263 57.4
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 4.6e-71 272.3 272 56.6
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.7e-70 270.4 258 56.6
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 3.0e-70 269.6 285 54.0
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 2.8e-68 263.1 263 55.9
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 8.9e-67 258.1 309 50.2
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 8.9e-67 258.1 250 56.0
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 2.2e-65 253.4 282 52.8
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.9e-65 253.1 271 55.7
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 4.9e-65 252.3 284 51.4
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 1.4e-64 250.8 271 55.4
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 2.0e-63 246.9 268 53.4
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 1.3e-62 244.2 225 62.2
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 1.7e-62 243.8 287 49.1
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 3.0e-62 243.0 304 50.3
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 8.6e-62 241.5 242 55.0
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 2.0e-58 230.3 251 54.6
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.6e-55 219.2 261 48.7
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 4.3e-53 212.6 287 47.4
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 4.0e-51 206.1 275 44.7
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 5.2e-51 205.7 284 46.1
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 1.6e-47 194.1 203 56.7
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 4.6e-47 192.6 180 55.6
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 3.9e-46 189.5 292 43.5
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 8.4e-41 171.8 179 54.2
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 6.0e-39 165.6 159 61.6
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 6.6e-38 162.2 242 45.5
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.9e-37 160.6 147 61.9
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 2.4e-35 153.7 260 39.2
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 5.3e-35 152.5 262 42.7
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 2.2e-33 147.1 282 36.2
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 2.1e-28 130.6 250 37.2
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 4.8e-28 129.4 116 60.3
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 1.0e-22 111.7 330 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 5.6e-21 105.9 331 29.9
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 3.1e-19 100.1 138 41.3
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 9.0e-19 98.6 85 63.5
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 1.2e-18 98.2 292 27.1
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 1.5e-18 97.8 140 46.4
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 4.5e-18 96.3 316 30.1
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 3.1e-11 73.6 241 32.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.5e-10 71.2 58 58.6
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 3.8e-09 66.6 136 35.3


User provided reference genes

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