Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 6.1e-233 810.4 410 100.0
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.7e-230 801.2 410 98.5
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 7.5e-199 697.2 410 85.1
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 6.8e-192 674.1 392 86.0
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 3.6e-185 651.7 382 85.3
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 9.2e-181 637.1 344 93.6
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 3.4e-167 592.0 349 85.4
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 9.6e-162 573.9 408 70.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.4e-159 565.5 410 68.8
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 7.6e-159 564.3 408 69.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.9e-158 561.6 378 73.8
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.2e-156 557.0 410 68.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 2.7e-156 555.8 412 68.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 6.0e-156 554.7 411 68.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.0e-155 552.4 411 69.3
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.1e-154 550.4 418 67.9
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 9.6e-154 547.4 439 64.0
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 6.2e-153 544.7 413 65.6
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.1e-152 543.9 479 59.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.4e-152 543.5 413 66.6
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-152 543.5 413 66.6
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.4e-152 542.7 413 66.8
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 4.0e-152 542.0 403 66.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.9e-152 541.2 413 66.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 9.0e-152 540.8 413 66.6
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.5e-151 540.0 409 65.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.5e-151 540.0 418 64.8
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 5.8e-151 538.1 412 64.8
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.8e-150 535.4 413 66.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.1e-149 533.9 410 66.1
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.5e-149 532.7 413 65.1
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 3.2e-149 532.3 414 65.2
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.2e-148 530.4 414 64.7
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.6e-148 530.0 410 63.7
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.0e-147 527.3 412 65.3
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.9e-147 525.4 413 65.1
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.1e-146 523.9 412 64.3
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 2.5e-146 522.7 413 63.7
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.3e-146 522.3 411 63.5
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.8e-145 518.5 411 64.0
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 4.8e-145 518.5 413 63.9
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 8.2e-145 517.7 409 64.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 6.9e-144 514.6 414 65.0
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 9.0e-144 514.2 411 63.5
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.5e-143 513.5 413 62.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.5e-143 513.5 415 62.9
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.4e-143 512.3 387 65.4
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.4e-143 512.3 407 63.1
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.4e-143 512.3 408 63.0
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.0e-142 510.8 408 65.0
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.7e-142 510.0 413 63.0
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.2e-142 509.6 410 62.0
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.9e-141 506.5 417 62.4
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.5e-141 505.0 399 62.2
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.7e-140 502.7 410 61.2
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 6.1e-140 501.5 408 61.5
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.3e-139 499.6 410 61.5
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 2.3e-139 499.6 413 61.7
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 5.1e-139 498.4 411 62.5
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.1e-138 497.3 407 62.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.0e-138 496.5 411 62.3
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.5e-138 496.1 383 64.8
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 4.3e-138 495.4 416 64.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 5.7e-138 495.0 412 63.3
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 9.7e-138 494.2 408 60.5
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 3.7e-137 492.3 412 60.4
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.7e-134 483.4 413 59.8
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.2e-134 483.0 401 58.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.4e-133 480.3 412 61.4
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.5e-133 479.6 421 58.2
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.2e-133 478.0 420 58.1
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 9.4e-133 477.6 410 60.7
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.0e-131 474.2 395 60.8
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.8e-131 473.4 413 59.1
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.3e-130 469.2 415 59.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.7e-129 466.8 390 60.0
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-128 464.2 348 66.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 2.6e-127 459.5 391 58.3
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.9e-126 456.1 351 64.4
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 8.5e-126 454.5 361 62.6
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.9e-125 453.4 395 57.0
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.5e-125 451.8 424 57.3
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.0e-123 446.0 343 66.8
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.1e-122 444.1 417 54.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 7.4e-122 441.4 393 58.3
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 5.3e-120 435.3 371 62.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.2e-117 424.9 389 58.4
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.1e-116 423.3 417 55.4
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 8.0e-116 421.4 419 54.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 5.2e-115 418.7 416 55.5
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.2e-114 417.5 420 54.3
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 2.0e-114 416.8 417 54.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.6e-114 416.4 391 56.5
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 2.6e-114 416.4 347 59.9
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 5.7e-114 415.2 422 53.6
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.3e-113 414.1 393 55.2
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 6.3e-113 411.8 360 55.8
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.3e-113 411.8 456 49.1
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.4e-112 410.6 469 47.8
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.6e-111 407.1 395 52.7
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.9e-110 402.9 358 58.1
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.5e-109 400.6 416 52.4
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 3.2e-109 399.4 416 52.6
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.6e-108 396.0 418 52.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.8e-107 391.7 299 67.2
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 9.5e-93 344.7 448 43.5
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.1e-88 331.3 374 46.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.0e-86 323.2 466 38.6
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.3e-81 307.8 265 57.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.4e-80 303.5 316 50.6
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 5.6e-77 292.4 217 65.0
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.8e-76 290.0 352 50.3
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-67 260.8 186 69.4
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 6.4e-65 252.3 198 64.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.6e-63 247.7 278 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.5e-61 241.1 315 43.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 5.6e-61 239.2 156 75.0
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.2e-60 235.7 188 62.8
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 6.6e-54 215.7 230 48.7
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 7.9e-47 192.2 133 72.2
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 6.7e-46 189.1 406 33.0
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 8.4e-41 172.2 149 60.4
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 9.3e-40 168.7 129 65.9
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.0e-38 165.2 346 31.8
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.1e-35 155.2 316 34.5
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.5e-34 151.4 316 32.6
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.7e-33 147.9 94 72.3
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.4e-33 145.6 130 58.5
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.5e-29 134.0 166 46.4
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 8.2e-28 129.0 599 23.7
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-27 127.9 135 49.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.6e-23 113.6 81 70.4
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.8e-19 101.3 123 44.7
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.0e-13 81.3 51 78.4
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 4.1e-11 73.6 46 69.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.1e-08 65.5 112 39.3
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 5.5e-08 63.2 270 23.0
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.4e-08 62.4 156 30.1
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 6.1e-07 59.7 80 41.2
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 6.7e-06 56.2 31 77.4


User provided reference genes

Program Settings