Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 4.9e-124 448.0 251 100.0
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.5e-120 436.4 251 95.2
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 4.4e-117 424.9 251 93.6
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 3.9e-97 358.6 250 81.6
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.9e-96 356.3 250 81.6
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.8e-92 342.0 234 83.3
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 1.0e-89 334.0 237 75.1
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 3.3e-72 275.8 246 63.0
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.3e-72 275.8 243 60.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 1.6e-71 273.5 245 67.8
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 1.1e-67 260.8 251 60.6
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.1e-67 260.8 247 62.3
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.6e-66 256.9 252 57.9
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 2.1e-66 256.5 245 56.7
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 2.7e-66 256.1 240 59.2
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.0e-65 254.2 231 60.2
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 1.3e-65 253.8 240 60.8
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 3.9e-65 252.3 243 59.3
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 3.9e-65 252.3 232 57.8
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 5.1e-65 251.9 244 58.6
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 6.7e-65 251.5 254 56.7
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.9e-64 250.0 243 60.1
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 2.5e-64 249.6 239 56.1
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.5e-64 249.6 247 57.9
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 2.5e-64 249.6 244 55.7
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 3.3e-64 249.2 247 56.3
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 4.3e-64 248.8 233 60.1
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 7.4e-64 248.1 240 57.9
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 7.4e-64 248.1 229 59.8
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 9.7e-64 247.7 239 55.6
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.3e-63 247.3 236 58.1
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.2e-63 246.5 240 58.3
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 2.8e-63 246.1 249 57.4
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 3.7e-63 245.7 238 55.9
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 4.8e-63 245.4 241 57.7
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 4.8e-63 245.4 240 62.9
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 8.2e-63 244.6 243 55.6
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 8.2e-63 244.6 246 56.1
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-62 244.2 239 57.3
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.1e-62 244.2 249 59.8
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 1.4e-62 243.8 187 65.8
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.4e-62 243.8 252 54.4
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.8e-62 243.4 244 55.3
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 4.1e-62 242.3 250 56.0
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 6.9e-62 241.5 249 53.4
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 9.0e-62 241.1 245 54.7
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 9.0e-62 241.1 194 66.0
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 9.0e-62 241.1 239 56.1
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 9.0e-62 241.1 233 62.7
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 9.0e-62 241.1 250 56.0
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.5e-61 240.4 245 54.7
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.5e-61 240.4 245 54.7
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.5e-61 240.4 250 56.0
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.5e-61 240.4 256 55.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.5e-61 240.4 239 56.1
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 2.0e-61 240.0 248 53.6
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.6e-61 239.6 244 55.3
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.6e-61 239.6 239 55.2
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 3.4e-61 239.2 247 53.8
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 7.7e-61 238.0 229 55.5
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 7.7e-61 238.0 240 54.6
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.3e-60 237.3 248 56.5
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.7e-60 236.9 244 61.1
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.7e-60 236.9 235 54.9
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 2.2e-60 236.5 238 59.7
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.2e-60 236.5 250 57.6
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 3.8e-60 235.7 238 60.9
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.8e-60 235.7 250 57.6
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 6.5e-60 235.0 250 57.6
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 3.2e-59 232.6 249 55.4
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 5.5e-59 231.9 235 54.0
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.2e-58 230.7 238 51.7
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.2e-58 230.7 246 51.6
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.6e-58 230.3 241 56.4
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 4.6e-58 228.8 188 60.6
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 1.4e-57 227.3 185 62.7
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 2.3e-57 226.5 185 61.1
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.0e-56 223.4 244 54.1
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 5.7e-56 221.9 236 50.4
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 7.4e-56 221.5 266 52.6
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.2e-55 219.9 136 76.5
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 3.7e-55 219.2 266 53.4
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 2.2e-52 209.9 193 57.5
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.4e-51 207.2 247 56.3
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 1.9e-51 206.8 243 50.2
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.8e-49 200.3 250 53.6
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 2.0e-48 196.8 193 52.8
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.6e-48 196.4 250 46.8
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.3e-48 196.1 193 53.9
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 8.2e-47 191.4 198 55.6
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.1e-46 189.1 244 46.3
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.6e-45 186.4 249 50.6
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.0e-41 172.9 246 43.1
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.1e-38 164.5 241 40.2
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 5.9e-37 158.7 258 40.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.9e-35 153.7 226 42.0
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 5.5e-35 152.1 225 40.0
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 2.0e-32 143.7 199 44.7
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 1.3e-31 141.0 251 41.8
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.7e-26 122.5 165 49.1
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.0e-25 121.3 165 48.5
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.0e-25 121.3 165 48.5
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.0e-25 119.4 239 43.1
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.0e-25 119.4 239 43.1
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 4.9e-23 112.5 150 48.0
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.1e-22 111.3 156 43.6
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.4e-22 109.0 153 41.2
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 9.2e-22 108.2 148 41.2
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 2.7e-21 106.7 130 56.2
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.5e-21 106.3 122 50.0
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 8.6e-20 101.7 134 53.0
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.5e-19 100.9 132 53.8
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.5e-19 100.1 147 42.9
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 2.5e-19 100.1 127 52.8
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 3.6e-18 96.3 125 52.8
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.0e-17 94.7 136 43.4
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.4e-17 94.4 145 49.7
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-17 94.0 190 35.8
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.2e-16 91.3 126 47.6
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 2.0e-16 90.5 138 39.1
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 9.2e-14 81.6 144 38.9
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 2.3e-12 77.0 114 42.1
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.5e-11 74.3 121 42.1
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.0e-09 68.2 65 55.4
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 6.4e-07 58.9 66 50.0


User provided reference genes

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