Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.1e-275 952.6 455 100.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.9e-272 941.8 455 98.9
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.5e-248 862.4 455 89.9
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 5.5e-243 844.0 455 88.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.5e-236 820.5 462 84.4
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.1e-222 776.5 457 78.6
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.9e-221 770.8 458 77.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.9e-221 770.8 458 77.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.3e-219 765.0 455 76.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.3e-219 763.8 458 77.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 6.2e-218 760.8 456 78.1
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 6.2e-218 760.8 458 77.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.0e-217 760.0 458 76.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 6.8e-217 757.3 440 78.2
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 8.9e-217 756.9 460 76.5
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.2e-216 756.5 458 76.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.5e-216 756.1 465 75.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 3.4e-216 755.0 458 76.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.5e-216 753.8 458 76.4
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.3e-215 753.1 458 76.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.7e-215 752.7 458 76.4
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.9e-215 751.9 454 77.1
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 4.9e-215 751.1 455 75.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.4e-214 748.8 460 75.4
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 9.2e-214 746.9 472 74.4
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.5e-213 745.0 458 75.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.7e-212 742.7 452 76.3
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.6e-212 740.3 457 74.2
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 7.3e-211 737.3 458 73.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.1e-210 735.7 458 74.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.6e-210 734.9 458 75.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.7e-210 734.6 461 74.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 8.1e-210 733.8 455 74.3
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 5.2e-209 731.1 443 76.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.0e-208 729.2 459 74.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.3e-207 726.5 456 74.1
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.7e-207 724.9 462 74.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.3e-207 723.8 451 73.4
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.9e-206 722.6 453 74.2
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 8.6e-204 713.8 443 75.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.2e-202 709.9 458 72.9
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.1e-202 709.1 453 73.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 8.1e-202 707.2 454 73.3
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.1e-201 706.8 456 73.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.1e-201 705.3 433 75.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.4e-200 701.8 448 72.3
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 4.4e-200 701.4 455 71.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.3e-199 699.9 432 74.8
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-198 696.8 426 74.2
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.4e-198 696.4 452 71.2
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.4e-198 695.7 456 72.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.4e-198 695.7 426 75.4
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.1e-198 694.9 426 74.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.2e-198 693.7 458 69.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 9.2e-198 693.7 427 75.4
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-197 693.3 458 69.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-197 692.2 464 70.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.6e-197 691.4 436 73.4
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 7.8e-197 690.6 445 71.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-196 690.3 456 70.8
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-196 689.5 458 68.6
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.0e-196 688.7 438 75.1
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.1e-196 688.0 457 70.9
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.1e-196 688.0 426 73.9
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.9e-195 686.0 425 74.4
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.2e-194 683.3 426 73.2
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 2.1e-194 682.6 449 71.7
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.1e-194 682.6 465 69.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.6e-194 681.8 457 71.8
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.1e-193 678.7 452 69.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 5.2e-193 677.9 395 79.2
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-191 673.3 473 66.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 8.4e-191 670.6 462 69.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.6e-189 664.8 492 64.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.0e-189 664.5 458 69.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.8e-189 664.1 458 70.3
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.3e-188 663.3 441 73.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.9e-187 659.4 483 66.9
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.3e-187 658.7 408 75.0
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.8e-186 655.6 459 65.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.5e-184 649.8 465 66.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.9e-183 644.8 458 64.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.9e-182 642.9 459 64.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.4e-182 642.5 452 66.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-182 641.7 459 64.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.7e-181 639.0 454 65.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 4.6e-181 638.3 461 67.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.9e-181 637.5 473 63.6
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-180 637.1 462 63.9
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-180 637.1 460 63.3
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.3e-180 636.7 459 63.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.9e-180 635.2 460 63.7
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 8.7e-180 634.0 462 63.2
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 8.7e-180 634.0 462 63.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 3.3e-179 632.1 462 63.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 5.6e-179 631.3 462 63.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 5.6e-179 631.3 385 77.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 8.1e-178 627.5 393 74.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.1e-177 625.5 448 64.7
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.0e-177 625.2 462 63.4
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-177 625.2 462 66.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.9e-177 624.4 369 78.3
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.1e-174 617.1 427 65.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-169 599.0 470 60.0
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-168 595.9 380 74.5
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.9e-167 592.4 474 62.9
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.5e-166 589.3 534 56.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 8.7e-164 580.9 490 58.0
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.2e-162 576.2 424 63.2
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-161 572.4 403 65.3
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.1e-157 559.7 421 64.4
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.3e-155 552.4 449 56.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.7e-154 550.1 460 55.4
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 5.9e-152 541.6 457 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 4.7e-149 531.9 438 57.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-142 510.8 351 67.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.2e-138 496.5 423 57.2
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.3e-135 487.3 474 52.5
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 3.8e-127 459.1 467 51.2
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.1e-125 453.4 290 74.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.1e-121 439.5 290 69.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.3e-119 433.3 344 62.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-119 432.6 459 51.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.6e-117 427.2 347 59.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 8.0e-117 424.9 347 58.8
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 4.0e-116 422.5 274 72.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.4e-113 412.1 412 52.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 8.3e-106 388.3 408 46.3
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.0e-96 355.5 207 77.8
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.6e-95 351.7 411 43.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.6e-91 340.1 434 40.8
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-80 304.3 277 57.4
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-80 304.3 214 68.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-72 277.3 175 75.4
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.3e-55 220.7 119 80.7
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-55 220.7 218 57.8
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 8.7e-55 218.8 223 52.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.9e-54 217.6 194 53.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.3e-53 214.9 231 52.8
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.3e-46 190.3 155 59.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 6.7e-39 166.0 109 67.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-38 164.1 257 39.7
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.7e-38 162.9 255 39.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.7e-37 161.4 105 67.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 6.3e-37 159.5 196 45.4
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.6e-35 154.1 94 77.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.4e-25 119.0 255 33.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 1.8e-23 114.8 71 70.4
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-20 104.0 62 74.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.1e-20 103.6 85 57.6
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-19 101.3 70 70.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.3e-18 98.6 135 37.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.2e-13 81.3 64 62.5
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.0e-10 70.1 36 86.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-09 68.2 79 45.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.7e-08 63.5 42 61.9
Nitab4.5_0001210g0060 Nicotiana tabacum HOM05D004439 ORTHO05D283019 1.8e-07 61.6 76 47.4


User provided reference genes

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