Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g082150.2 Solanum lycopersicum HOM05D006525 ORTHO05D007845 4.1e-66 254.6 129 100.0
Sopen08g030430 Solanum pennellii HOM05D006525 ORTHO05D007845 4.5e-65 251.1 128 98.4
PGSC0003DMG400012159 Solanum tuberosum HOM05D006525 ORTHO05D007845 2.5e-63 245.4 128 96.1
CAN.G532.106 Capsicum annuum HOM05D006525 ORTHO05D007845 8.8e-45 183.7 96 90.6
MSTRG.11933 Avicennia marina HOM05D006525 ORTHO05D007845 2.0e-41 172.6 140 66.4
CANSAT21G0126 Cannabis sativa HOM05D006525 ORTHO05D007845 2.2e-40 169.1 121 69.4
FAN13G2324 Fragaria x ananassa HOM05D006525 ORTHO05D007845 2.2e-40 169.1 92 82.6
TPR.G3436 Trifolium pratense HOM05D006525 ORTHO05D007845 6.5e-40 167.5 128 67.2
FvH4_5g04410 Fragaria vesca HOM05D006525 ORTHO05D007845 8.5e-40 167.2 107 72.0
FAN18G4350 Fragaria x ananassa HOM05D006525 ORTHO05D007845 8.5e-40 167.2 107 72.0
TWI15G0402 Tripterygium wilfordii HOM05D006525 ORTHO05D007845 1.9e-39 166.0 122 68.9
CiPaw.11G122700 Carya illinoinensis HOM05D006525 ORTHO05D007845 5.5e-39 164.5 101 75.2
Dinv37543 Davidia involucrata HOM05D006525 ORTHO05D007845 5.5e-39 164.5 132 64.4
Lj4g0012415 Lotus japonicus HOM05D006525 ORTHO05D007845 5.5e-39 164.5 100 75.0
Medtr8g099380 Medicago truncatula HOM05D006525 ORTHO05D007845 5.5e-39 164.5 107 71.0
Thecc.03G295800 Theobroma cacao HOM05D006525 ORTHO05D007845 5.5e-39 164.5 128 65.6
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 1.2e-38 163.3 92 79.3
RcHm_v2.0_Chr7g0195151 Rosa chinensis HOM05D006525 ORTHO05D007845 1.6e-38 162.9 92 80.4
DCAR_027712 Daucus carota HOM05D006525 ORTHO05D007845 2.1e-38 162.5 123 63.4
Ca_17485_v3 Cicer arietinum L. HOM05D006525 ORTHO05D007845 2.7e-38 162.2 87 80.5
MD14G1123300 Malus domestica HOM05D006525 ORTHO05D007845 2.7e-38 162.2 87 85.1
Prupe.5G117200 Prunus persica HOM05D006525 ORTHO05D007845 2.7e-38 162.2 129 65.9
QL02p030956 Quercus lobata HOM05D006525 ORTHO05D007845 2.7e-38 162.2 87 83.9
Sp7g00260 Schrenkiella parvula HOM05D006525 ORTHO05D007845 2.7e-38 162.2 108 68.5
SalBow1G2372 Salvia bowleyana HOM05D006525 ORTHO05D007845 3.6e-38 161.8 133 62.4
SalBow1G4596 Salvia bowleyana HOM05D006525 ORTHO05D007845 3.6e-38 161.8 133 62.4
Aa31LG9G310 Aethionema arabicum HOM05D006525 ORTHO05D007845 4.7e-38 161.4 110 68.2
EL10Ac5g12902 Beta vulgaris HOM05D006525 ORTHO05D007845 4.7e-38 161.4 123 64.2
Gorai.007G025600 Gossypium raimondii HOM05D006525 ORTHO05D007845 4.7e-38 161.4 107 71.0
Duzib068G0461 Durio zibethinus HOM05D006525 ORTHO05D007845 1.0e-37 160.2 122 65.6
vmacro11437 Vaccinium macrocarpon HOM05D006525 ORTHO05D007845 1.0e-37 160.2 106 70.8
Aqoxy5G04177 Aquilegia oxysepala HOM05D006525 ORTHO05D007845 1.8e-37 159.5 129 63.6
Peaxi162Scf00074g01026 Petunia axillaris HOM05D006525 ORTHO05D007845 1.8e-37 159.5 134 67.2
PGR031G0465 Punica granatum HOM05D006525 ORTHO05D007845 3.0e-37 158.7 90 80.0
THA.LOC104817658 Tarenaya hassleriana HOM05D006525 ORTHO05D007845 3.0e-37 158.7 128 64.1
Atru.chr9.2016 Acer truncatum HOM05D006525 ORTHO05D007845 4.0e-37 158.3 86 81.4
Ciclev10022095m.g Citrus clementina HOM05D006525 ORTHO05D007845 4.0e-37 158.3 93 76.3
Eucgr.D01725 Eucalyptus grandis HOM05D006525 ORTHO05D007845 5.2e-37 157.9 90 77.8
Gohir.D11G024000 Gossypium hirsutum HOM05D006525 ORTHO05D007845 5.2e-37 157.9 107 69.2
Psat7g027440 Pisum sativum HOM05D006525 ORTHO05D007845 5.2e-37 157.9 105 69.5
AUR62019825 Chenopodium quinoa HOM05D006525 ORTHO05D007845 6.8e-37 157.5 123 63.4
Lalb_Chr16g0390611 Lupinus albus HOM05D006525 ORTHO05D007845 6.8e-37 157.5 101 72.3
BraA07t29782Z Brassica rapa HOM05D006525 ORTHO05D007845 8.8e-37 157.1 123 65.0
Gohir.A11G024300 Gossypium hirsutum HOM05D006525 ORTHO05D007845 8.8e-37 157.1 127 63.8
Cc08_g15920 Coffea canephora HOM05D006525 ORTHO05D007845 1.5e-36 156.4 131 59.5
Haze_08630 Corylus avellana HOM05D006525 ORTHO05D007845 2.0e-36 156.0 93 77.4
GSVIVG01019512001 Vitis vinifera HOM05D006525 ORTHO05D007845 2.0e-36 156.0 87 78.2
C06p20270 Brassica napus HOM05D006525 ORTHO05D007845 3.4e-36 155.2 116 64.7
BolC6t37207H Brassica oleracea HOM05D006525 ORTHO05D007845 3.4e-36 155.2 116 64.7
Sabra01G0069100 Salix brachista HOM05D006525 ORTHO05D007845 3.4e-36 155.2 86 77.9
Sc22g0005060 Simmondsia chinensis HOM05D006525 ORTHO05D007845 3.4e-36 155.2 122 63.9
A07p20960 Brassica napus HOM05D006525 ORTHO05D007845 4.4e-36 154.8 123 63.4
Cfa022937 Carpinus fangiana HOM05D006525 ORTHO05D007845 5.7e-36 154.5 91 75.8
Nn3g19049 Nelumbo nucifera HOM05D006525 ORTHO05D007845 5.7e-36 154.5 123 63.4
VMungo0251G1352 Vigna mungo HOM05D006525 ORTHO05D007845 7.5e-36 154.1 99 72.7
unitig_88.g27636 Utricularia gibba HOM05D006525 ORTHO05D007845 9.8e-36 153.7 112 64.3
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 1.3e-35 153.3 123 61.8
AUR62010826 Chenopodium quinoa HOM05D006525 ORTHO05D007845 1.7e-35 152.9 123 64.2
Rhsim02G0241900 Rhododendron simsii HOM05D006525 ORTHO05D007845 1.7e-35 152.9 87 79.3
BcaC08g44560 Brassica carinata HOM05D006525 ORTHO05D007845 2.2e-35 152.5 116 63.8
Potri.001G092800 Populus trichocarpa HOM05D006525 ORTHO05D007845 3.7e-35 151.8 98 68.4
Sed0028109 Sechium edule HOM05D006525 ORTHO05D007845 3.7e-35 151.8 94 73.4
AT5G41850 Arabidopsis thaliana HOM05D006525 ORTHO05D007845 4.8e-35 151.4 100 71.0
CARHR212710 Cardamine hirsuta HOM05D006525 ORTHO05D007845 4.8e-35 151.4 87 77.0
Cpa.g.sc79.53 Carica papaya HOM05D006525 ORTHO05D007845 4.8e-35 151.4 127 61.4
Hma1.2p1_0359F.1_g135300 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 4.8e-35 151.4 88 77.3
Os05g0214400 Oryza sativa ssp. japonica HOM05D006525 ORTHO05D007845 4.8e-35 151.4 86 77.9
Actinidia22144 Actinidia chinensis HOM05D006525 ORTHO05D007845 6.3e-35 151.0 112 64.3
Hma1.2p1_0359F.1_g135310 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 6.3e-35 151.0 87 77.0
Manes.01G047000 Manihot esculenta HOM05D006525 ORTHO05D007845 8.3e-35 150.6 83 80.7
AL7G47380 Arabidopsis lyrata HOM05D006525 ORTHO05D007845 1.1e-34 150.2 102 70.6
Phvul.002G297400 Phaseolus vulgaris HOM05D006525 ORTHO05D007845 1.1e-34 150.2 96 70.8
PSO384G4490 Papaver somniferum HOM05D006525 ORTHO05D007845 1.4e-34 149.8 107 66.4
Hund11396 Selenicereus undatus HOM05D006525 ORTHO05D007845 1.4e-34 149.8 87 79.3
ClCG01G001950 Citrullus lanatus HOM05D006525 ORTHO05D007845 1.8e-34 149.4 94 74.5
Nitab4.5_0010144g0010 Nicotiana tabacum HOM05D006525 ORTHO05D007845 1.8e-34 149.4 128 68.0
CSS0006968 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 2.4e-34 149.1 86 79.1
CSS0025848 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 2.4e-34 149.1 86 79.1
BcaB02g07875 Brassica carinata HOM05D006525 ORTHO05D007845 4.1e-34 148.3 123 61.8
Carub.0007s3351 Capsella rubella HOM05D006525 ORTHO05D007845 4.1e-34 148.3 123 62.6
Glyma.08G022100 Glycine max HOM05D006525 ORTHO05D007845 1.2e-33 146.7 101 69.3
HanXRQChr13g0415031 Helianthus annuus HOM05D006525 ORTHO05D007845 1.6e-33 146.4 126 61.9
Oeu009950.2 Olea europaea HOM05D006525 ORTHO05D007845 1.6e-33 146.4 168 50.6
HPP92_000617 Vanilla planifolia HOM05D006525 ORTHO05D007845 2.0e-33 146.0 127 57.5
Migut.A00669 Erythranthe guttata HOM05D006525 ORTHO05D007845 2.7e-33 145.6 138 57.2
Zm00001eb283820 Zea mays HOM05D006525 ORTHO05D007845 3.5e-33 145.2 86 74.4
arahy.Tifrunner.gnm1.ann1.3UM0RM Arachis hypogaea HOM05D006525 ORTHO05D007845 7.7e-33 144.1 102 66.7
MBI07_g34229_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 7.7e-33 144.1 92 69.6
arahy.Tifrunner.gnm1.ann1.56CREW Arachis hypogaea HOM05D006525 ORTHO05D007845 1.3e-32 143.3 102 66.7
MELO3C005745.2 Cucumis melo HOM05D006525 ORTHO05D007845 1.3e-32 143.3 130 60.0
HanXRQChr17g0535171 Helianthus annuus HOM05D006525 ORTHO05D007845 3.8e-32 141.7 126 59.5
CsaV3_5G002090 Cucumis sativus L. HOM05D006525 ORTHO05D007845 5.0e-32 141.4 130 59.2
ECA240G1071 Erigeron canadensis HOM05D006525 ORTHO05D007845 2.5e-31 139.0 123 60.2
SMO290G0001 Selaginella moellendorffii HOM05D006525 ORTHO05D007845 2.5e-31 139.0 99 61.6
HanXRQChr06g0166551 Helianthus annuus HOM05D006525 ORTHO05D007845 1.6e-30 136.3 87 71.3
PSO339G1283 Papaver somniferum HOM05D006525 ORTHO05D007845 2.8e-30 135.6 135 54.8
ECA246G0134 Erigeron canadensis HOM05D006525 ORTHO05D007845 3.6e-30 135.2 124 59.7
SGA_v2.0_scaffold96G28973 Striga asiatica HOM05D006525 ORTHO05D007845 8.8e-29 130.6 215 39.1
TAR636G1454 Trochodendron aralioides HOM05D006525 ORTHO05D007845 5.7e-28 127.9 69 84.1
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.3e-27 126.7 108 53.7
Nitab4.5_0000223g0360 Nicotiana tabacum HOM05D006525 ORTHO05D007845 1.3e-27 126.7 128 57.8
Thhalv10028271m.g Eutrema salsugineum HOM05D006525 ORTHO05D007845 2.8e-27 125.6 93 65.6
Lsat_1_v5_gn_3_10281 Lactuca sativa HOM05D006525 ORTHO05D007845 4.9e-27 124.8 128 54.7
Pp3c22_1320 Physcomitrium patens HOM05D006525 ORTHO05D007845 2.7e-25 119.0 129 47.3
MBI07_g27263_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.7e-24 116.3 66 75.8
MD06G1104600 Malus domestica HOM05D006525 ORTHO05D007845 6.6e-24 114.4 69 75.4
BcaNung06853 Brassica carinata HOM05D006525 ORTHO05D007845 1.1e-23 113.6 69 72.5
MBI07_g34230_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.1e-23 113.6 66 74.2
CBR_g29721 Chara braunii HOM05D006525 ORTHO05D007845 2.1e-22 109.4 89 53.9
Lsat_1_v5_gn_6_84361 Lactuca sativa HOM05D006525 ORTHO05D007845 1.2e-20 103.6 69 68.1
SEGI_26681 Sequoiadendron giganteum HOM05D006525 ORTHO05D007845 4.6e-17 91.7 63 68.3
Lj2A170G33 Lonicera japonica HOM05D006525 ORTHO05D007845 2.6e-12 75.9 45 71.1
Pp3c22_17300 Physcomitrium patens HOM05D006525 ORTHO05D007845 1.7e-11 73.2 127 33.9
HanXRQChr03g0061741 Helianthus annuus HOM05D006525 ORTHO05D007845 5.4e-10 68.2 41 70.7


User provided reference genes

Program Settings