Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 2917.1 1465 100.0
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 2832.7 1507 95.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 2679.0 1513 90.7
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 2277.3 1517 77.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1858.6 1111 84.6
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1733.0 1084 82.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1678.7 1548 58.2
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1558.9 1538 56.0
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1552.7 1540 55.6
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1550.4 1537 55.8
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1527.7 1550 54.8
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1525.4 1547 54.7
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1516.5 1568 53.5
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1503.8 1527 53.9
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1500.7 1536 54.3
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1532 53.9
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1489.6 1528 53.8
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1486.9 1531 54.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1479.9 1534 53.5
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1474.9 1532 52.7
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1469.5 1531 53.3
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1468.0 1535 53.3
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1543 53.5
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1486 55.0
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1466.4 1551 52.9
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1463.0 1535 53.4
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1459.5 1530 52.9
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1457.6 1545 52.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1456.4 1565 53.4
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1452.6 1553 52.9
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1438.3 1537 52.6
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1437.9 1573 52.4
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1437.6 1506 53.5
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1430.2 1524 52.5
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1483 53.3
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1425.6 1503 53.3
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1424.5 1632 49.9
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1422.9 1544 51.1
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1422.9 1520 52.3
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1543 51.7
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1406.7 1555 52.1
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1398.3 1624 49.6
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1397.1 1543 50.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1395.9 1499 52.3
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1391.3 1561 51.2
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1389.8 1536 51.0
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1388.6 1545 51.1
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1385.5 1536 50.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1369.0 1533 50.4
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1369.0 1518 50.3
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1368.6 1421 53.7
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1360.5 1532 49.8
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1343.9 1520 49.6
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1343.2 1522 50.6
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1343.2 1522 49.8
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1337.0 1361 54.7
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1335.1 1523 49.8
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1334.7 1519 49.9
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1332.8 1525 50.0
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1331.2 1538 49.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1330.9 1524 49.1
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1328.2 1516 49.6
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1325.8 1538 49.0
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1318.1 1520 48.9
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1316.2 1527 48.9
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1309.3 1517 49.0
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1307.7 1526 49.7
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1304.3 1582 48.6
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1302.7 1519 50.4
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1294.3 1536 49.0
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1293.1 1538 49.2
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1292.7 1517 48.1
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1292.3 1523 49.1
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1290.8 1520 48.5
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1289.2 1527 49.0
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1289.2 1527 49.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1285.0 1542 48.5
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1281.9 1546 48.4
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1281.5 1502 49.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1280.8 1363 53.5
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1271.1 1549 48.2
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1271.1 1538 48.2
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1266.1 1538 48.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1266.1 1524 47.4
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1260.4 1594 47.9
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1238.4 1541 47.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1227.6 1591 45.4
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1221.8 1426 48.9
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1204.5 1524 46.0
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1198.3 1325 50.7
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1169.8 1390 48.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1154.0 1531 45.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1139.4 1537 43.9
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 4.2e-308 1062.0 1463 44.8
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 3.5e-307 1058.9 1531 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.3e-229 801.2 1620 33.5
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 6.6e-221 772.3 1008 45.0
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.2e-183 646.7 485 70.1
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.6e-182 644.8 485 68.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.8e-163 580.9 914 40.2
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 6.9e-162 576.2 1494 30.8
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.4e-125 455.7 712 41.4
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.1e-122 444.1 955 34.1
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 3.5e-97 361.3 407 49.1
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.2e-49 203.4 584 28.9
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 6.9e-45 187.6 179 59.2
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.9e-34 152.9 182 48.4
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.7e-32 144.4 109 59.6
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.1e-29 137.1 111 60.4
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-26 125.9 84 69.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.5e-26 125.9 93 62.4
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.3e-23 115.5 87 66.7
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.3e-23 115.5 87 66.7
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-21 110.5 81 65.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.8e-16 91.3 67 74.6
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 5.5e-10 71.6 55 69.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 4.0e-08 65.5 104 40.4


User provided reference genes

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