Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 2.0e-200 702.2 358 100.0
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.9e-191 671.4 362 95.9
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 6.8e-188 660.6 364 94.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 9.5e-182 640.2 364 91.8
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 8.9e-180 633.6 363 90.1
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.9e-177 625.9 363 90.6
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 1.5e-171 606.3 365 87.1
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.1e-120 436.4 367 64.6
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.7e-120 435.3 368 66.0
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.9e-119 432.2 369 66.1
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 5.2e-119 431.8 368 65.8
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 7.4e-118 427.9 367 63.8
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.1e-116 424.1 369 64.2
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.8e-116 423.3 371 63.6
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 5.3e-116 421.8 368 63.0
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 7.0e-116 421.4 367 64.3
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.0e-115 419.9 373 63.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.3e-114 417.2 376 62.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 2.5e-113 412.9 363 62.8
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 3.2e-113 412.5 368 61.1
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.6e-112 410.2 366 60.7
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 4.7e-112 408.7 374 60.7
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.0e-111 407.5 367 60.5
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.0e-111 407.5 367 61.3
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.3e-111 406.4 367 61.3
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.3e-111 406.4 364 62.1
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 3.0e-111 406.0 364 62.1
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 4.0e-111 405.6 365 61.9
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 5.2e-111 405.2 365 58.6
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 5.2e-111 405.2 405 57.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 6.7e-111 404.8 361 64.3
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.8e-111 404.4 364 61.5
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 8.8e-111 404.4 365 61.1
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-110 403.7 371 60.1
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.5e-110 403.7 367 61.0
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 2.0e-110 403.3 369 61.2
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.3e-110 402.5 367 59.9
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 4.4e-110 402.1 371 60.6
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.7e-110 401.0 367 61.9
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.3e-109 400.6 367 60.8
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.3e-109 400.6 368 60.9
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.7e-109 400.2 366 58.7
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.7e-109 400.2 364 61.8
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.7e-109 400.2 367 61.9
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.7e-109 400.2 362 60.8
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 2.2e-109 399.8 365 61.1
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.8e-109 399.4 374 59.9
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 3.7e-109 399.1 376 58.5
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.8e-109 398.7 368 60.3
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 4.8e-109 398.7 365 58.9
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.1e-108 397.5 373 60.9
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.4e-108 397.1 374 59.9
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.6e-107 393.7 366 60.1
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.9e-107 391.7 391 57.8
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.7e-106 390.2 360 59.7
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 2.2e-106 389.8 404 57.2
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.5e-106 388.3 363 59.0
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 8.5e-106 387.9 366 59.8
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 8.5e-106 387.9 371 58.0
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 3.2e-105 386.0 350 60.3
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.2e-105 384.8 370 57.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 2.1e-104 383.3 367 58.3
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.7e-104 382.9 370 59.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.6e-104 382.5 364 58.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.0e-104 381.3 368 59.0
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 8.0e-104 381.3 394 56.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 4.0e-103 379.0 359 58.2
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.5e-102 377.1 362 58.3
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.3e-101 374.0 364 59.1
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.8e-100 370.2 364 56.3
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.8e-100 370.2 372 57.5
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 7.0e-100 368.2 378 56.1
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.2e-99 367.5 376 54.8
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 2.0e-99 366.7 410 51.2
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.3e-98 364.0 378 55.3
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.9e-98 362.8 409 50.4
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 5.0e-98 362.1 367 58.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 8.0e-96 354.8 378 54.0
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 4.0e-95 352.4 381 54.1
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 4.0e-95 352.4 349 56.4
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 3.4e-94 349.4 401 51.1
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 9.8e-94 347.8 385 53.5
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 6.3e-93 345.1 399 52.9
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.8e-92 343.6 394 52.5
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 3.1e-92 342.8 391 53.2
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 5.4e-92 342.0 407 50.6
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 9.2e-92 341.3 403 50.9
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.7e-91 339.7 389 51.4
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.5e-91 339.0 358 57.8
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 7.8e-91 338.2 398 52.0
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 7.8e-91 338.2 389 52.7
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.0e-90 337.8 391 51.7
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.9e-90 336.3 391 51.9
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.8e-90 335.9 391 52.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 5.6e-89 332.0 362 53.3
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 9.5e-89 331.3 402 51.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-88 330.9 405 50.4
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.8e-87 327.0 407 49.4
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.8e-87 327.0 405 51.1
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 4.0e-87 325.9 412 49.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.4e-86 322.8 411 49.4
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 3.4e-86 322.8 411 49.4
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.8e-86 322.0 392 49.5
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 7.5e-86 321.6 407 50.9
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 9.8e-86 321.2 308 56.8
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.7e-85 319.3 406 50.5
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 9.2e-84 314.7 327 56.3
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-83 313.9 359 53.5
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 9.5e-81 304.7 373 50.4
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.6e-80 303.9 361 51.0
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 8.3e-77 291.6 427 43.6
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 3.5e-67 259.6 277 55.2
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 9.3e-52 208.4 364 38.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.3e-48 198.0 480 34.2
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.6e-48 197.6 296 43.6
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.3e-47 192.6 399 36.3
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 4.9e-45 186.0 278 44.2
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 9.3e-44 181.8 185 54.6
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 9.3e-44 181.8 185 54.6
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 9.3e-44 181.8 185 54.6
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.6e-43 181.0 139 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 6.2e-40 169.1 527 29.6
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.9e-37 160.2 361 39.6
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 9.3e-36 155.2 143 58.7
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 7.4e-33 145.6 139 57.6
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.3e-31 139.4 389 30.8
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.5e-27 126.7 198 43.4
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 5.7e-25 119.4 133 51.1
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 8.2e-24 115.5 324 32.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 8.8e-18 95.5 377 27.9
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 8.8e-18 95.5 377 27.9
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.0e-17 94.4 172 39.0
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.8e-15 87.8 84 56.0
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-11 74.7 42 83.3
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.3e-10 70.9 108 40.7
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.8e-07 61.2 126 33.3
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.5e-06 56.6 77 41.6
DCAR_031559 Daucus carota HOM05D037052 ORTHO05D177761 4.5e-06 56.6 38 71.1


User provided reference genes

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