Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 4.9e-174 614.4 312 100.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 8.1e-169 597.0 312 97.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 5.8e-151 537.7 312 88.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.1e-149 530.8 312 87.2
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.3e-145 520.0 310 85.5
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.5e-138 496.5 312 80.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.5e-111 406.8 208 98.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.4e-109 400.2 313 67.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 9.7e-106 387.5 316 64.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 6.5e-102 374.8 316 63.3
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.5e-101 371.7 315 63.5
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 6.7e-99 364.8 317 62.8
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.4e-98 362.1 326 62.3
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 2.8e-97 359.4 313 62.0
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.4e-96 356.3 221 79.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.2e-95 354.0 303 63.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.0e-95 353.2 313 62.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.5e-95 352.1 313 63.6
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 4.5e-95 352.1 318 60.4
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.9e-95 351.7 247 74.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.2e-93 345.9 313 59.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.2e-93 345.9 314 59.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.6e-92 342.4 360 54.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 8.0e-92 341.3 314 59.9
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.8e-91 340.1 315 58.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.0e-91 339.0 323 58.8
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 5.7e-90 335.1 314 58.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.5e-87 325.9 257 65.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.9e-85 320.1 223 71.3
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.2e-85 319.3 318 58.5
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 5.5e-85 318.5 292 59.2
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 7.2e-85 318.2 224 70.5
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 9.5e-85 317.8 311 55.0
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.6e-84 317.0 248 65.7
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.1e-84 316.6 315 56.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.8e-84 316.2 224 70.1
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.6e-84 315.8 313 55.0
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 4.7e-84 315.5 248 65.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 4.7e-84 315.5 238 65.5
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 4.7e-84 315.5 313 55.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.0e-84 314.7 199 78.4
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.4e-83 313.9 311 55.3
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.3e-83 313.2 248 64.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 5.2e-83 312.0 260 61.5
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 3.4e-82 309.3 314 55.4
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.3e-81 307.4 219 68.9
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.2e-81 306.6 251 63.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 3.7e-81 305.8 220 69.1
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 4.9e-81 305.4 188 80.3
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 6.3e-81 305.1 185 81.1
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 1.4e-80 303.9 242 64.9
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-80 303.5 211 72.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.8e-80 303.5 211 72.0
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.1e-80 302.8 285 57.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.1e-80 302.8 211 71.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 7.0e-80 301.6 248 60.9
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 7.0e-80 301.6 205 72.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.2e-79 300.8 230 65.7
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.6e-79 300.4 270 59.3
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.6e-79 300.4 281 56.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 4.5e-79 298.9 195 74.9
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.9e-79 298.5 280 59.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 7.8e-79 298.1 232 64.7
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.0e-78 297.7 224 66.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.0e-78 297.7 227 66.5
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.3e-78 297.4 282 57.4
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-78 297.0 220 65.9
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-78 297.0 220 65.9
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.3e-78 296.6 201 72.6
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 7.3e-77 291.6 219 68.9
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.5e-77 291.2 201 69.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 9.5e-77 291.2 246 62.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.2e-76 290.8 201 69.2
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.6e-76 290.4 227 66.1
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.6e-76 290.4 207 69.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.1e-76 290.0 248 59.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.6e-76 289.3 194 70.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.0e-75 286.2 190 76.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 4.0e-75 285.8 204 67.2
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 6.8e-75 285.0 262 59.2
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.6e-74 283.1 188 70.7
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 4.4e-74 282.3 212 66.5
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.7e-74 282.0 194 71.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.7e-74 282.0 224 66.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 9.8e-74 281.2 193 75.6
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.9e-73 279.6 204 68.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 4.9e-73 278.9 193 71.0
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 4.9e-73 278.9 203 69.0
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 6.4e-73 278.5 207 65.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 6.4e-73 278.5 248 58.5
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 8.3e-73 278.1 305 52.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 8.3e-73 278.1 196 70.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-72 277.7 246 58.9
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.1e-72 277.7 194 71.6
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.4e-72 277.3 189 70.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.8e-72 276.9 203 65.5
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-72 276.9 249 58.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.8e-72 276.9 180 71.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-72 276.6 246 58.5
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 7.0e-72 275.0 216 63.4
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 7.0e-72 275.0 185 71.9
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.6e-71 273.9 200 69.5
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.0e-71 273.5 183 72.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.7e-71 273.1 194 69.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 4.6e-71 272.3 198 68.7
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.1e-69 267.7 169 75.1
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.6e-69 265.4 217 65.0
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.2e-68 261.9 247 56.7
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 3.4e-66 256.1 188 65.4
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 9.2e-64 248.1 160 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 4.6e-63 245.7 187 65.2
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.5e-61 240.7 197 65.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 5.6e-61 238.8 180 63.9
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.6e-60 236.1 256 52.7
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.2e-59 232.3 134 82.8
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.2e-58 231.1 175 65.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.4e-56 223.4 158 71.5
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 7.1e-56 221.9 173 60.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.7e-55 219.9 172 64.5
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.7e-54 217.2 203 57.6
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 8.6e-54 214.9 167 66.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.4e-50 202.6 203 55.2
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.6e-50 201.8 109 89.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.9e-46 189.5 118 77.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.9e-41 173.3 93 88.2
PGSC0003DMG402012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 5.6e-37 159.1 91 90.1
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-36 157.9 250 40.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.8e-34 149.1 112 68.8
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.8e-34 149.1 112 68.8
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-32 144.4 244 41.0
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 7.1e-32 142.1 92 69.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-29 134.8 123 61.8
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.1e-27 128.3 137 46.7
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 5.3e-27 125.9 163 39.9
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.2e-26 124.8 133 44.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.0e-26 124.0 135 47.4
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 7.6e-26 122.1 111 58.6
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.4e-19 100.5 90 60.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 3.5e-15 86.7 85 52.9
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.9e-14 83.2 192 36.5
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.5e-10 69.7 41 70.7
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.1e-08 65.1 60 51.7
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 4.6e-07 59.7 39 71.8
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.1e-06 56.2 127 35.4


User provided reference genes

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