Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 0.0e+00 1133.6 559 100.0
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 0.0e+00 1086.2 537 99.3
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 0.0e+00 1082.4 537 98.9
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 6.9e-304 1046.6 538 95.2
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 7.2e-293 1010.0 534 92.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.8e-289 998.0 558 88.4
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.4e-288 995.7 558 88.2
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 4.4e-274 947.6 538 85.1
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 5.3e-272 940.6 533 85.2
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 6.5e-270 933.7 532 84.2
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.9e-269 932.2 537 82.5
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.9e-269 932.2 537 83.1
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.2e-269 931.4 532 84.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.2e-269 931.4 532 84.4
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 5.5e-269 930.6 532 83.8
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.5e-269 930.6 534 84.3
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 9.4e-269 929.9 537 82.3
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.2e-268 929.5 532 82.7
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.1e-268 928.7 537 82.1
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 3.6e-268 927.9 538 83.8
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 4.7e-268 927.5 537 82.7
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.3e-267 925.2 532 83.1
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.3e-267 925.2 532 83.1
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 3.0e-267 924.9 532 83.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.2e-266 922.9 529 82.6
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.5e-266 922.5 532 83.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.5e-266 922.5 538 81.4
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.5e-266 922.5 530 82.8
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.5e-266 922.5 538 83.5
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 7.5e-266 920.2 533 83.1
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 7.5e-266 920.2 538 82.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 7.5e-266 920.2 533 82.7
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 9.7e-266 919.8 529 82.2
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.3e-265 919.5 537 81.4
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 2.2e-265 918.7 537 81.8
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 2.8e-265 918.3 537 80.8
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 6.3e-265 917.1 533 82.2
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 6.3e-265 917.1 529 83.0
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 8.2e-265 916.8 529 81.9
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 8.2e-265 916.8 537 81.9
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.4e-264 916.0 530 81.7
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.8e-264 915.6 537 82.3
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.4e-264 915.2 540 81.9
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.4e-264 915.2 539 81.6
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 4.1e-264 914.4 529 83.0
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.1e-264 914.4 533 82.0
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 9.1e-264 913.3 537 81.0
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.2e-263 912.9 537 81.8
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-263 912.5 537 80.6
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.6e-263 912.5 537 80.6
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 2.7e-263 911.8 529 82.2
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.5e-263 911.4 537 80.8
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.9e-263 910.6 537 80.8
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.0e-262 909.8 540 81.3
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 3.8e-262 907.9 529 81.3
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.0e-262 907.5 537 80.6
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.0e-262 907.5 544 80.1
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 6.5e-262 907.1 529 81.9
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 6.5e-262 907.1 537 80.6
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.5e-262 907.1 537 80.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 8.5e-262 906.7 537 80.6
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.9e-261 905.6 530 82.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.2e-261 903.7 537 80.3
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 9.4e-261 903.3 533 82.9
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-260 902.9 529 81.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.1e-260 902.1 529 80.5
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.7e-260 901.7 537 79.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.6e-260 901.4 533 81.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.6e-260 901.4 537 80.3
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.6e-260 901.4 537 79.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.8e-259 899.0 538 79.6
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.8e-259 899.0 529 81.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 6.8e-259 897.1 529 81.5
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.2e-258 896.3 529 81.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.2e-258 896.3 537 81.0
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.5e-258 896.0 538 79.7
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.5e-258 896.0 527 80.3
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.4e-258 894.8 533 79.0
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 5.7e-258 894.0 529 81.5
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.7e-257 892.5 529 81.3
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 6.3e-257 890.6 533 80.3
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 2.4e-256 888.6 533 80.1
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.4e-256 888.6 533 79.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 2.4e-256 888.6 537 79.3
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 4.1e-256 887.9 533 79.4
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 7.0e-256 887.1 533 79.9
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 9.1e-256 886.7 530 80.2
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.0e-255 885.6 538 79.2
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.7e-255 885.2 533 79.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.7e-255 885.2 533 80.9
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.7e-255 885.2 533 80.9
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 2.7e-255 885.2 529 79.8
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 3.5e-255 884.8 530 80.0
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.3e-254 882.9 533 80.7
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.7e-254 882.5 538 79.2
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 7.2e-253 877.1 534 78.3
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.8e-252 875.2 538 80.1
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.8e-252 875.2 536 76.3
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 3.6e-252 874.8 529 79.4
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.4e-251 872.8 537 78.0
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 3.0e-251 871.7 533 78.2
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 4.0e-251 871.3 533 78.2
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 7.5e-250 867.1 529 76.9
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.8e-249 865.1 536 75.9
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.9e-249 864.4 534 77.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 2.4e-248 862.1 529 77.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 7.8e-247 857.1 684 65.2
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.8e-243 845.9 541 76.7
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.0e-243 845.1 529 78.3
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 5.4e-240 834.3 499 81.0
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 7.3e-237 823.9 668 64.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 3.1e-235 818.5 488 80.7
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.5e-234 813.9 495 79.0
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.2e-232 808.5 556 70.3
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.8e-228 795.4 527 71.3
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.3e-227 792.3 539 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.5e-226 789.6 541 68.4
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 4.4e-218 761.5 526 68.6
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 3.0e-214 748.8 533 72.4
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.6e-212 743.0 532 65.6
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 6.9e-211 737.6 525 65.5
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 8.7e-206 720.7 535 63.9
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 5.3e-203 711.4 442 79.0
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 8.7e-198 694.1 404 79.2
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 5.6e-197 691.4 525 64.4
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 2.9e-193 679.1 497 65.8
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 8.7e-182 641.0 364 82.1
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.5e-178 628.6 506 64.0
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.3e-169 600.5 422 70.4
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 3.5e-162 575.9 712 49.4
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.5e-136 490.0 301 77.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 9.2e-131 471.5 537 49.3
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 3.6e-127 459.5 313 72.5
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.9e-120 437.2 534 47.0
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.8e-106 388.7 411 51.8
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.7e-98 363.6 262 67.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 8.1e-79 298.9 186 75.3
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 4.6e-66 256.5 148 81.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.6e-61 240.7 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.2e-42 178.7 140 63.6
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.0e-41 174.1 219 45.7
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.5e-36 156.0 94 76.6
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 5.5e-35 153.3 88 84.1
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.2e-34 152.1 104 70.2
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 3.7e-31 140.6 106 66.0
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 8.6e-20 102.8 93 61.3
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 5.2e-17 93.6 96 50.0
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 4.1e-14 84.0 46 82.6
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.5e-13 80.9 53 69.8
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 3.1e-09 67.8 45 64.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 6.8e-09 66.6 44 65.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 6.8e-09 66.6 44 65.9
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 5.8e-08 63.5 41 68.3
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 7.5e-08 63.2 50 72.0
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 1.3e-07 62.4 220 25.9
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 4.9e-07 60.5 40 72.5
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 6.4e-07 60.1 85 51.8
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 1.9e-06 58.5 136 31.6
SEGI_03802 Sequoiadendron giganteum HOM05D001661 ORTHO05D001575 4.1e-06 57.4 159 30.8
Eucgr.I02609 Eucalyptus grandis HOM05D001661 ORTHO05D001575 9.2e-06 56.2 133 27.8


User provided reference genes

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