Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g081100.4 Solanum lycopersicum HOM05D000141 ORTHO05D001860 1.9e-125 452.6 243 100.0
Sopen08g029420 Solanum pennellii HOM05D000141 ORTHO05D001860 1.0e-110 403.7 243 91.4
PGSC0003DMG400012206 Solanum tuberosum HOM05D000141 ORTHO05D001860 3.8e-105 385.2 243 89.3
Nitab4.5_0013184g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001860 1.9e-101 372.9 246 86.6
Nitab4.5_0001615g0170 Nicotiana tabacum HOM05D000141 ORTHO05D001860 3.3e-101 372.1 245 86.1
CAN.G774.46 Capsicum annuum HOM05D000141 ORTHO05D001860 2.6e-98 362.5 244 84.4
Peaxi162Scf00119g00946 Petunia axillaris HOM05D000141 ORTHO05D001860 5.8e-98 361.3 245 84.1
Migut.A00761 Erythranthe guttata HOM05D000141 ORTHO05D001860 3.0e-62 242.7 251 59.8
Actinidia14563 Actinidia chinensis HOM05D000141 ORTHO05D001860 3.7e-60 235.7 247 59.5
SGA_v2.0_scaffold173G39185 Striga asiatica HOM05D000141 ORTHO05D001860 2.6e-58 229.6 246 59.8
Cc08_g14760 Coffea canephora HOM05D000141 ORTHO05D001860 8.5e-57 224.6 245 57.6
Rhsim07G0090500 Rhododendron simsii HOM05D000141 ORTHO05D001860 3.2e-56 222.6 246 58.1
MSTRG.11983 Avicennia marina HOM05D000141 ORTHO05D001860 4.4e-53 212.2 253 54.9
CSS0022971 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 8.2e-52 208.0 262 52.3
vmacro13958 Vaccinium macrocarpon HOM05D000141 ORTHO05D001860 1.4e-51 207.2 235 54.5
Actinidia27381 Actinidia chinensis HOM05D000141 ORTHO05D001860 3.1e-51 206.1 245 53.9
Hma1.2p1_0377F.1_g139280 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 1.5e-50 203.8 197 60.9
TAR374G0639 Trochodendron aralioides HOM05D000141 ORTHO05D001860 1.5e-50 203.8 252 53.6
CSS0028635 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 4.5e-50 202.2 248 54.0
CSS0047289 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 4.5e-50 202.2 248 54.0
Dinv38943 Davidia involucrata HOM05D000141 ORTHO05D001860 1.0e-49 201.1 225 56.9
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 4.2e-48 195.7 254 53.9
TAR629G2026 Trochodendron aralioides HOM05D000141 ORTHO05D001860 1.6e-47 193.7 253 53.0
Lj2C187G2 Lonicera japonica HOM05D000141 ORTHO05D001860 1.0e-46 191.0 255 54.5
Psat7g033040 Pisum sativum HOM05D000141 ORTHO05D001860 1.5e-45 187.2 262 50.4
PGR031G0249 Punica granatum HOM05D000141 ORTHO05D001860 2.0e-45 186.8 256 51.6
Lj4g0003055 Lotus japonicus HOM05D000141 ORTHO05D001860 2.6e-45 186.4 265 50.6
ECA233G1024 Erigeron canadensis HOM05D000141 ORTHO05D001860 3.3e-45 186.0 261 49.8
QL12p032934 Quercus lobata HOM05D000141 ORTHO05D001860 5.7e-45 185.3 265 47.9
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 1.3e-44 184.1 254 49.2
Medtr8g098230 Medicago truncatula HOM05D000141 ORTHO05D001860 1.3e-44 184.1 261 49.4
TWI60G1186 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 2.8e-44 183.0 245 50.6
Glyma.05G208100 Glycine max HOM05D000141 ORTHO05D001860 1.4e-43 180.6 261 49.4
Cfa012227 Carpinus fangiana HOM05D000141 ORTHO05D001860 1.8e-43 180.3 270 47.4
Phvul.002G289700 Phaseolus vulgaris HOM05D000141 ORTHO05D001860 4.1e-43 179.1 261 48.7
Glyma.08G014800 Glycine max HOM05D000141 ORTHO05D001860 5.3e-43 178.7 260 48.8
PSO782G3574 Papaver somniferum HOM05D000141 ORTHO05D001860 5.3e-43 178.7 258 48.4
Ca_17531_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 7.0e-43 178.3 268 48.9
TAR375G0473 Trochodendron aralioides HOM05D000141 ORTHO05D001860 7.0e-43 178.3 223 52.5
Haze_08780 Corylus avellana HOM05D000141 ORTHO05D001860 9.1e-43 177.9 259 47.9
TWI15G0349 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.2e-42 177.6 251 49.0
CiPaw.12G093000 Carya illinoinensis HOM05D000141 ORTHO05D001860 2.6e-42 176.4 261 46.7
Cpa.g.sc74.53 Carica papaya HOM05D000141 ORTHO05D001860 5.9e-42 175.3 248 48.0
PSO478G1443 Papaver somniferum HOM05D000141 ORTHO05D001860 2.2e-41 173.3 257 47.1
Eucgr.D01842 Eucalyptus grandis HOM05D000141 ORTHO05D001860 5.0e-41 172.2 252 48.0
VMungo0251G0114 Vigna mungo HOM05D000141 ORTHO05D001860 6.5e-41 171.8 262 46.9
Atru.chr9.2187 Acer truncatum HOM05D000141 ORTHO05D001860 1.9e-40 170.2 252 49.6
SGA_v2.0_scaffold96G28934 Striga asiatica HOM05D000141 ORTHO05D001860 4.2e-40 169.1 243 47.3
Lalb_Chr16g0390001 Lupinus albus HOM05D000141 ORTHO05D001860 6.1e-39 165.2 260 46.5
Sc01g0009580 Simmondsia chinensis HOM05D000141 ORTHO05D001860 8.0e-39 164.9 249 47.0
DCAR_000615 Daucus carota HOM05D000449 ORTHO05D000360 1.0e-38 164.5 257 48.6
MSTRG.1864 Avicennia marina HOM05D000141 ORTHO05D001860 1.4e-38 164.1 241 47.3
CiPaw.11G135100 Carya illinoinensis HOM05D000141 ORTHO05D001860 4.0e-38 162.5 291 43.0
Manes.02G021900 Manihot esculenta HOM05D000141 ORTHO05D001860 5.2e-38 162.2 271 46.1
AUR62010684 Chenopodium quinoa HOM05D000141 ORTHO05D001860 8.8e-38 161.4 246 49.2
AUR62017198 Chenopodium quinoa HOM05D000141 ORTHO05D001860 1.2e-37 161.0 246 47.6
Lalb_Chr05g0224751 Lupinus albus HOM05D000141 ORTHO05D001860 1.2e-37 161.0 263 48.7
Thecc.03G278900 Theobroma cacao HOM05D000141 ORTHO05D001860 2.6e-37 159.8 262 45.8
Duzib205G0527 Durio zibethinus HOM05D000141 ORTHO05D001860 4.4e-37 159.1 254 46.9
arahy.Tifrunner.gnm1.ann1.LDZ3RE Arachis hypogaea HOM05D000141 ORTHO05D001860 1.7e-36 157.1 261 46.7
Peaxi162Scf00074g00819 Petunia axillaris HOM05D000141 ORTHO05D001860 2.2e-36 156.8 139 69.8
arahy.Tifrunner.gnm1.ann1.Z2QY1L Arachis hypogaea HOM05D000141 ORTHO05D001860 8.3e-36 154.8 260 45.8
CANSAT21G1366 Cannabis sativa HOM05D000141 ORTHO05D001860 1.1e-35 154.5 284 42.3
CANSAT21G0110 Cannabis sativa HOM05D000141 ORTHO05D001860 1.4e-35 154.1 282 41.8
TPR.G12809 Trifolium pratense HOM05D000141 ORTHO05D001860 1.4e-35 154.1 294 42.5
Duzib084G0842 Durio zibethinus HOM05D000141 ORTHO05D001860 4.1e-35 152.5 241 47.7
Ciclev10018623m.g Citrus clementina HOM05D000141 ORTHO05D001860 5.3e-35 152.1 248 45.6
ATR0705G028 Amborella trichopoda HOM05D000141 ORTHO05D001860 1.2e-34 151.0 259 44.8
HanXRQChr13g0394261 Helianthus annuus HOM05D000141 ORTHO05D001860 1.6e-34 150.6 236 47.0
Nn5g28325 Nelumbo nucifera HOM05D000141 ORTHO05D001860 2.0e-34 150.2 213 50.2
Sed0006706 Sechium edule HOM05D000141 ORTHO05D001860 2.7e-34 149.8 255 45.1
CsaV3_5G002790 Cucumis sativus L. HOM05D000141 ORTHO05D001860 3.5e-34 149.4 268 44.4
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 4.5e-34 149.1 265 44.5
RcHm_v2.0_Chr7g0197651 Rosa chinensis HOM05D000141 ORTHO05D001860 2.9e-33 146.4 270 45.9
COL.COLO4_34467 Corchorus olitorius HOM05D000141 ORTHO05D001860 1.1e-32 144.4 261 44.4
Dinv37639 Davidia involucrata HOM05D000141 ORTHO05D001860 1.5e-32 144.1 218 46.3
Gohir.A03G016500 Gossypium hirsutum HOM05D000141 ORTHO05D001860 5.5e-32 142.1 259 42.1
Gorai.003G158800 Gossypium raimondii HOM05D000141 ORTHO05D001860 9.4e-32 141.4 258 43.4
Potri.001G104000 Populus trichocarpa HOM05D000141 ORTHO05D001860 9.4e-32 141.4 258 43.4
Sabra03G0091000 Salix brachista HOM05D000141 ORTHO05D001860 1.6e-31 140.6 239 43.9
MELO3C005678.2 Cucumis melo HOM05D000141 ORTHO05D001860 2.1e-31 140.2 266 43.2
Potri.003G127800 Populus trichocarpa HOM05D000141 ORTHO05D001860 2.7e-31 139.8 271 42.1
FAN18G1325 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.0e-30 136.3 272 43.8
Gohir.D03G151400 Gossypium hirsutum HOM05D000141 ORTHO05D001860 4.0e-30 136.0 259 42.1
Sed0014958 Sechium edule HOM05D000141 ORTHO05D001860 4.0e-30 136.0 270 41.9
FvH4_5g02480 Fragaria vesca HOM05D000141 ORTHO05D001860 2.0e-29 133.7 272 43.4
CDE05G2866 Ceratophyllum demersum HOM05D000141 ORTHO05D001860 7.5e-29 131.7 222 44.6
FAN04G0301 Fragaria x ananassa HOM05D000141 ORTHO05D001860 9.8e-29 131.3 279 42.3
Oeu042327.1 Olea europaea HOM05D000141 ORTHO05D001860 9.8e-29 131.3 240 40.8
FAN13G3278 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.7e-28 129.4 276 42.4
AL2G11600 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 6.3e-28 128.6 270 41.5
BcaB07g31560 Brassica carinata HOM05D000141 ORTHO05D001860 6.3e-28 128.6 260 41.9
BolC9t54556H Brassica oleracea HOM05D000141 ORTHO05D001860 8.3e-28 128.3 260 41.9
Sp2g01030 Schrenkiella parvula HOM05D000141 ORTHO05D001860 1.1e-27 127.9 268 41.4
BcaB07g31406 Brassica carinata HOM05D000141 ORTHO05D001860 1.4e-27 127.5 265 40.0
A09p15410 Brassica napus HOM05D000141 ORTHO05D001860 1.4e-27 127.5 263 41.8
GSVIVG01019753001 Vitis vinifera HOM05D000141 ORTHO05D001860 1.8e-27 127.1 248 41.9
AT1G63640 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 2.4e-27 126.7 268 39.9
Oeu064087.2 Olea europaea HOM05D000141 ORTHO05D001860 3.1e-27 126.3 241 40.2
Aa31LG2G850 Aethionema arabicum HOM05D000141 ORTHO05D001860 4.1e-27 125.9 262 38.2
BcaC04g22695 Brassica carinata HOM05D000141 ORTHO05D001860 4.1e-27 125.9 260 41.5
C09p18680 Brassica napus HOM05D000141 ORTHO05D001860 5.4e-27 125.6 264 40.9
BcaC04g22495 Brassica carinata HOM05D000141 ORTHO05D001860 7.0e-27 125.2 263 41.1
BolC9t54765H Brassica oleracea HOM05D000141 ORTHO05D001860 9.1e-27 124.8 264 40.9
BraA09t37183Z Brassica rapa HOM05D000141 ORTHO05D001860 9.1e-27 124.8 244 42.2
EL10Ac5g13063 Beta vulgaris HOM05D000141 ORTHO05D001860 1.2e-26 124.4 246 43.5
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 2.0e-26 123.6 210 44.8
Ah.12g056890 Amaranthus hybridus HOM05D000141 ORTHO05D001860 4.5e-26 122.5 246 44.7
Actinidia33751 Actinidia chinensis HOM05D000141 ORTHO05D001860 7.7e-26 121.7 135 56.3
Thhalv10027628m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 7.7e-26 121.7 268 39.9
FAN08G1054 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.3e-25 120.9 272 41.5
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 2.3e-25 120.2 245 41.2
BcaB07g31573 Brassica carinata HOM05D000141 ORTHO05D001860 2.3e-25 120.2 245 41.2
CARHR047700 Cardamine hirsuta HOM05D000141 ORTHO05D001860 1.5e-24 117.5 267 39.3
THA.LOC104809394 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 2.5e-24 116.7 245 40.0
Ah.02g116660 Amaranthus hybridus HOM05D000141 ORTHO05D001860 5.5e-24 115.5 246 43.9
Cfa019777 Carpinus fangiana HOM05D000141 ORTHO05D001860 5.5e-24 115.5 189 44.4
Haze_18673 Corylus avellana HOM05D000141 ORTHO05D001860 2.1e-23 113.6 174 44.8
MD06G1083300 Malus domestica HOM05D000141 ORTHO05D001860 1.4e-22 110.9 359 31.2
Hund11467 Selenicereus undatus HOM05D000141 ORTHO05D001860 1.4e-22 110.9 242 40.9
Lj8A221T69 Lonicera japonica HOM05D000141 ORTHO05D001860 1.8e-22 110.5 265 37.4
BcaB07g31569 Brassica carinata HOM05D000141 ORTHO05D001860 2.3e-22 110.2 181 43.6
Prupe.5G100400 Prunus persica HOM05D000141 ORTHO05D001860 3.0e-22 109.8 333 32.4
Gohir.A12G228300 Gossypium hirsutum HOM05D000141 ORTHO05D001860 5.2e-22 109.0 222 39.6
TWI60G0408 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.5e-21 107.5 254 38.2
Carub.0002s0122 Capsella rubella HOM05D000141 ORTHO05D001860 2.6e-21 106.7 270 38.5
BraA09t37030Z Brassica rapa HOM05D000141 ORTHO05D001860 1.7e-20 104.0 234 40.2
Nn1g09524 Nelumbo nucifera HOM05D000141 ORTHO05D001860 1.7e-20 104.0 194 43.3
Prupe.5G221200 Prunus persica HOM05D000141 ORTHO05D001860 2.2e-20 103.6 243 36.2
QL10p025328 Quercus lobata HOM05D000141 ORTHO05D001860 2.8e-20 103.2 232 38.4
RcHm_v2.0_Chr5g0040651 Rosa chinensis HOM05D000141 ORTHO05D001860 2.8e-20 103.2 183 45.9
Hund14800 Selenicereus undatus HOM05D000141 ORTHO05D001860 3.7e-20 102.8 248 39.1
Gohir.D12G230801 Gossypium hirsutum HOM05D000141 ORTHO05D001860 8.3e-20 101.7 222 38.3
vmacro10114 Vaccinium macrocarpon HOM05D000141 ORTHO05D000827 8.3e-20 101.7 106 57.5
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 1.4e-19 100.9 177 43.5
Gorai.008G247000 Gossypium raimondii HOM05D000141 ORTHO05D001860 3.2e-19 99.8 183 41.0
RcHm_v2.0_Chr7g0185451 Rosa chinensis HOM05D000141 ORTHO05D001860 2.9e-17 93.2 243 35.4
Lsat_1_v5_gn_6_6561 Lactuca sativa HOM05D000141 ORTHO05D001860 8.6e-17 91.7 146 45.2
Os06g0554700 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 1.5e-16 90.9 228 36.8
GSVIVG01008287001 Vitis vinifera HOM05D000141 ORTHO05D001860 1.9e-16 90.5 220 36.8
Aa31LG9G630 Aethionema arabicum HOM05D000141 ORTHO05D001860 4.3e-16 89.4 234 36.8
Cpa.g.sc3.512 Carica papaya HOM05D000141 ORTHO05D001860 4.3e-16 89.4 252 35.7
Manes.01G060600 Manihot esculenta HOM05D000141 ORTHO05D001860 4.3e-16 89.4 279 34.4
MD14G1105100 Malus domestica HOM05D000141 ORTHO05D001860 3.6e-15 86.3 368 28.8
Carub.0007s3419 Capsella rubella HOM05D000141 ORTHO05D001860 4.7e-15 85.9 242 36.8
SEGI_04506 Sequoiadendron giganteum HOM05D000141 ORTHO05D001860 2.3e-14 83.6 211 37.4
AT5G41310 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 8.9e-14 81.6 249 34.5
Zm00001eb277550 Zea mays HOM05D000141 ORTHO05D001860 1.5e-13 80.9 258 34.5
Dinv28102 Davidia involucrata HOM05D000141 ORTHO05D001860 2.6e-13 80.1 251 31.9
Hma1.2p1_0653F.1_g196300 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 1.1e-11 74.7 256 35.5
TWI81G0735 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.9e-11 73.9 114 48.2
AL7G48150 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 4.1e-11 72.8 184 36.4
Hund02390 Selenicereus undatus HOM05D000141 ORTHO05D001860 1.2e-10 71.2 243 34.2
AUR62029862 Chenopodium quinoa HOM05D000141 ORTHO05D001860 2.7e-10 70.1 246 35.8
FAN04G1298 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.5e-10 69.7 240 33.3
Sc04g0003520 Simmondsia chinensis HOM05D000141 ORTHO05D001860 3.5e-10 69.7 251 33.5
AUR62025894 Chenopodium quinoa HOM05D000141 ORTHO05D001860 4.6e-10 69.3 246 35.4
Oeu058029.1 Olea europaea HOM05D000141 ORTHO05D001860 1.0e-09 68.2 227 36.1
unitig_37.g12245 Utricularia gibba HOM05D000141 ORTHO05D001860 1.3e-09 67.8 74 56.8
Haze_08779 Corylus avellana HOM05D000141 ORTHO05D001860 6.6e-09 65.5 54 72.2
FAN08G0207 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.9e-08 63.9 190 33.2
Potri.015G047400 Populus trichocarpa HOM05D000141 ORTHO05D001860 1.9e-08 63.9 243 33.3
FvH4_5g12130 Fragaria vesca HOM05D000141 ORTHO05D001860 3.3e-08 63.2 190 32.6
FAN18G1630 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.3e-08 63.2 190 32.6
Nitab4.5_0001194g0050 Nicotiana tabacum HOM05D000141 ORTHO05D001860 3.3e-08 63.2 207 33.3
FAN13G0310 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.2e-07 61.2 166 34.3
Os02g0229600 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 3.6e-07 59.7 174 33.3
Lj5C148T5 Lonicera japonica HOM05D000141 ORTHO05D001860 6.2e-07 58.9 190 32.1
Sed0024610 Sechium edule HOM05D000141 ORTHO05D001860 1.8e-06 57.4 250 31.2
Sed0024401 Sechium edule HOM05D000141 ORTHO05D001860 5.2e-06 55.8 183 32.2
CiPaw.15G130600 Carya illinoinensis HOM05D000141 ORTHO05D001860 6.8e-06 55.5 172 33.7
Hund10242 Selenicereus undatus HOM05D000141 ORTHO05D001860 8.9e-06 55.1 247 31.2


User provided reference genes

Program Settings