Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 6.6e-297 1023.5 592 100.0
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.7e-268 929.1 563 95.9
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 9.0e-262 906.7 488 98.8
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 6.1e-250 867.5 576 87.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.8e-241 839.3 525 85.3
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 2.6e-240 835.5 491 89.6
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.6e-234 815.1 490 87.3
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 3.5e-221 771.9 527 80.8
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 2.1e-218 762.7 497 78.3
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 2.3e-217 759.2 492 79.1
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.5e-216 756.5 497 79.7
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 9.8e-216 753.8 492 81.1
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 4.9e-215 751.5 537 79.5
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.1e-214 748.8 505 75.8
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 4.1e-214 748.4 495 76.8
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 5.9e-213 744.6 492 78.7
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 5.9e-213 744.6 505 75.2
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.7e-212 743.0 490 76.5
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 6.6e-212 741.1 487 79.3
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 6.6e-212 741.1 528 79.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.1e-211 740.3 543 77.2
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.9e-211 739.6 530 80.0
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 3.3e-211 738.8 424 84.7
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 4.3e-211 738.4 534 77.9
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.6e-210 736.5 425 84.0
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.6e-210 736.5 487 79.5
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.6e-210 736.5 436 82.6
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.1e-210 736.1 431 84.7
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 6.1e-210 734.6 489 75.5
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.8e-209 733.0 428 84.3
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 6.8e-209 731.1 494 75.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.8e-209 731.1 527 77.4
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 8.9e-209 730.7 490 74.9
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 3.7e-207 725.3 533 76.7
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 8.3e-207 724.2 494 74.7
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 2.4e-206 722.6 492 78.0
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 3.2e-206 722.2 494 76.1
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 4.1e-206 721.8 527 77.8
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 9.2e-206 720.7 488 78.1
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 4.6e-205 718.4 431 82.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 6.0e-205 718.0 488 76.6
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.0e-204 717.2 528 75.4
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 3.0e-204 715.7 490 77.8
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 5.0e-204 714.9 492 74.8
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.1e-203 713.8 489 75.7
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.1e-203 713.8 524 77.1
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 4.3e-203 711.8 429 80.4
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 5.6e-203 711.4 429 81.4
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 5.6e-203 711.4 428 81.1
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.6e-202 709.9 497 72.6
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.6e-202 709.9 455 78.9
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 3.6e-202 708.8 525 73.3
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.1e-201 707.2 442 81.0
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.4e-201 706.8 487 72.7
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.8e-201 704.5 490 75.7
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 2.0e-200 703.0 490 75.5
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.8e-200 701.4 428 82.0
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 7.5e-200 701.0 424 82.3
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 9.8e-200 700.7 467 77.3
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 4.9e-199 698.4 421 82.2
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 6.4e-199 698.0 421 83.4
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.1e-198 697.2 491 71.7
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.2e-198 695.7 487 76.2
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 9.2e-198 694.1 490 73.7
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.1e-197 693.0 493 74.0
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 3.5e-197 692.2 510 74.5
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.0e-197 691.4 429 81.1
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 7.8e-197 691.0 493 73.6
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.9e-195 686.4 481 72.8
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.3e-195 685.6 576 63.7
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 4.3e-195 685.3 511 74.0
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 7.3e-195 684.5 430 78.4
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.2e-194 683.7 429 77.6
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.6e-194 683.3 495 73.1
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.6e-194 683.3 429 77.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 2.8e-194 682.6 429 77.6
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.7e-194 681.8 413 79.9
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.7e-194 681.8 413 79.9
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 6.2e-194 681.4 413 79.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.1e-194 681.0 429 77.2
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.1e-193 680.6 492 74.2
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.5e-192 676.8 413 79.2
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.0e-192 676.4 424 77.8
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 5.8e-192 674.9 429 76.5
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 7.5e-192 674.5 433 75.8
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.3e-191 673.7 429 77.4
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.3e-191 673.7 429 76.7
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 3.7e-191 672.2 424 78.8
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 1.0e-188 664.1 436 77.3
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.3e-188 662.9 494 72.5
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 6.6e-188 661.4 470 72.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 8.6e-188 661.0 434 75.8
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 7.3e-187 657.9 424 76.4
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 9.5e-187 657.5 433 76.7
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.9e-179 633.3 492 70.3
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-177 627.5 493 70.0
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.9e-177 624.8 422 73.5
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 9.0e-177 624.4 429 72.7
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.4e-174 617.1 489 67.1
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 1.2e-173 614.0 528 67.0
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-171 607.4 353 85.3
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 4.5e-168 595.5 506 63.8
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 7.6e-168 594.7 504 61.1
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 3.8e-167 592.4 499 62.3
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 3.2e-166 589.3 491 66.0
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.6e-165 587.0 391 76.7
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 1.6e-165 587.0 414 70.3
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 4.6e-165 585.5 504 63.7
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 7.9e-165 584.7 489 63.8
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 7.9e-165 584.7 504 62.7
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 6.7e-164 581.6 485 63.9
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 5.6e-163 578.6 470 64.7
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.6e-162 577.0 417 74.1
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 4.0e-161 572.4 359 78.6
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.5e-160 570.5 377 75.9
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.6e-157 560.5 425 68.7
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.8e-153 547.0 463 61.8
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 7.6e-152 541.6 444 62.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.3e-151 540.8 444 61.5
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 7.9e-149 531.6 432 62.7
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.1e-147 527.7 413 66.6
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-140 501.9 459 58.2
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.2e-133 481.1 371 66.6
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.0e-131 473.8 424 57.3
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 5.7e-131 472.2 488 52.9
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-130 470.7 495 56.4
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.7e-130 470.7 410 58.8
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.2e-128 464.5 487 57.5
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 5.9e-128 462.2 361 66.5
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 7.2e-126 455.3 362 66.0
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 6.1e-125 452.2 435 54.5
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 1.0e-124 451.4 438 53.9
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 5.9e-120 435.6 406 59.1
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 7.7e-120 435.3 416 57.2
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 7.2e-118 428.7 669 40.8
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 6.8e-116 422.2 444 54.5
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 2.2e-114 417.2 421 52.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.8e-106 390.2 351 57.8
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 3.6e-101 373.2 281 69.0
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.8e-100 370.9 305 63.0
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 6.8e-100 369.0 431 50.3
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.3e-98 364.8 443 47.6
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 5.4e-97 359.4 240 77.1
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.5e-94 351.3 475 43.6
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 1.2e-93 348.2 301 59.5
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 6.4e-90 335.9 435 45.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 8.1e-85 318.9 399 42.6
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.0e-79 300.4 338 48.2
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 2.5e-78 297.4 202 70.8
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 4.6e-72 276.6 267 63.3
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.0e-71 275.4 348 48.9
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 7.3e-70 269.2 173 77.5
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 4.9e-50 203.4 277 46.2
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 3.8e-42 177.2 98 85.7
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.8e-31 141.7 105 65.7
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 4.8e-29 133.7 192 44.3
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 2.6e-27 127.9 106 63.2
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.7e-26 125.2 115 62.6
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 5.5e-25 120.2 93 72.0
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 4.3e-22 110.5 148 43.9
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 2.8e-21 107.8 112 52.7
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 4.8e-21 107.1 122 46.7
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 1.4e-20 105.5 155 45.8
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 3.1e-20 104.4 208 41.8
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.3e-20 103.6 70 65.7
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 5.0e-18 97.1 112 48.2
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.9e-17 95.1 45 93.3
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 4.2e-17 94.0 76 60.5
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 2.3e-15 88.2 171 33.3
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 6.7e-15 86.7 75 53.3
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 5.7e-14 83.6 46 84.8
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 5.3e-12 77.0 101 44.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 7.7e-11 73.2 96 42.7
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.2e-09 67.4 90 48.9
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 5.5e-09 67.0 112 36.6
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.2e-08 65.9 62 50.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.1e-08 65.1 199 25.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.7e-08 64.7 343 24.2
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 5.2e-07 60.5 29 93.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 8.8e-07 59.7 332 21.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.4e-06 57.4 226 23.5


User provided reference genes

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