Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 0.0e+00 1230.3 604 100.0
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 0.0e+00 1083.6 566 94.7
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 4.3e-283 977.6 566 85.5
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.5e-267 925.2 566 82.2
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 6.6e-244 847.4 554 75.3
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.3e-242 843.2 569 72.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 5.3e-241 837.8 571 72.9
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.1e-236 821.2 599 72.1
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 9.9e-232 807.0 571 70.1
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.7e-231 806.2 571 69.9
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 7.4e-227 790.8 561 68.8
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 5.3e-225 784.6 557 68.4
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 9.0e-225 783.9 634 64.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 4.9e-223 778.1 563 68.0
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 2.5e-222 775.8 563 67.0
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 3.2e-222 775.4 565 66.7
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 9.3e-222 773.9 564 67.4
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 9.3e-222 773.9 564 67.2
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 4.6e-221 771.5 561 66.3
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.0e-220 770.4 574 65.7
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.0e-220 770.4 564 67.0
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 1.0e-220 770.4 558 68.5
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.3e-220 769.2 570 66.7
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.9e-219 766.1 562 66.5
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.3e-218 763.5 602 64.6
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.6e-218 763.1 563 65.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.8e-218 762.3 564 65.2
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 6.3e-218 761.1 564 65.8
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.4e-217 760.0 561 64.5
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 4.1e-217 758.4 555 65.6
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 5.3e-217 758.1 561 65.2
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 5.3e-217 758.1 565 63.4
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 4.5e-216 755.0 564 65.6
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 7.6e-216 754.2 578 64.4
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.4e-214 750.0 554 64.8
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 1.9e-214 749.6 555 65.0
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 7.2e-214 747.7 554 65.2
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 3.6e-213 745.3 569 65.0
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.6e-213 745.0 547 65.8
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 4.6e-213 745.0 630 61.0
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 6.1e-213 744.6 570 63.3
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 7.9e-213 744.2 545 65.7
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 7.9e-213 744.2 538 66.5
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.0e-212 743.8 566 63.3
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.0e-212 743.8 577 62.9
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 3.9e-212 741.9 556 64.7
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.7e-210 736.5 564 63.1
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.1e-209 733.8 556 64.2
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.4e-209 733.4 556 63.8
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.8e-209 733.0 566 63.3
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.8e-209 733.0 570 64.7
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.4e-209 732.6 612 64.2
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.8e-207 725.3 606 60.6
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 3.8e-207 725.3 565 64.2
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 6.5e-207 724.5 544 64.5
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.4e-206 723.4 569 64.1
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 5.5e-206 721.5 573 61.3
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 5.1e-204 714.9 547 63.1
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 3.3e-203 712.2 539 64.4
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 4.4e-203 711.8 589 59.8
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 3.7e-202 708.8 511 65.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.4e-201 706.8 564 62.9
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 6.9e-201 704.5 590 60.8
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.4e-200 702.2 564 62.8
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 7.2e-198 694.5 488 67.8
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 9.4e-198 694.1 565 60.5
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 2.1e-197 693.0 488 68.0
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.4e-196 690.3 546 61.5
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.0e-196 689.1 565 60.4
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 6.7e-196 688.0 554 61.2
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 7.4e-195 684.5 565 62.1
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 7.4e-195 684.5 615 58.9
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 5.3e-193 678.3 547 60.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 4.5e-192 675.2 558 61.1
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.9e-191 672.5 547 61.2
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 8.5e-191 671.0 489 64.8
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.6e-189 665.6 539 60.1
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-188 663.7 602 57.6
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 4.1e-185 652.1 435 70.3
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.3e-183 647.1 565 59.1
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.2e-182 642.5 583 58.1
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 3.6e-181 639.0 567 64.4
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.5e-179 633.6 551 58.8
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.5e-168 595.9 556 54.1
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.9e-168 595.1 562 56.4
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 2.3e-167 593.2 563 55.8
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 4.3e-166 589.0 447 66.0
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 6.1e-165 585.1 569 53.1
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 4.0e-164 582.4 438 66.4
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 8.9e-156 554.7 527 56.2
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.5e-155 553.9 573 51.8
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 2.6e-147 526.6 562 51.8
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 8.6e-143 511.5 378 66.9
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 2.4e-140 503.4 354 67.2
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.2e-131 474.6 405 57.8
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 9.3e-129 464.9 360 63.1
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.7e-128 463.4 360 62.8
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 9.9e-115 418.3 271 72.3
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.6e-112 411.0 560 44.6
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 6.7e-95 352.4 546 39.6
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.5e-86 324.7 234 64.5
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.7e-86 322.8 284 57.7
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 2.7e-80 303.9 297 52.9
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.8e-76 291.2 275 57.8
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.6e-56 223.8 261 48.3
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.7e-43 181.0 188 50.5
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.5e-41 174.5 133 66.2
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 9.8e-38 162.5 116 64.7
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 3.5e-35 154.1 123 59.3
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 7.8e-35 152.9 139 59.0
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 1.7e-34 151.8 140 55.7
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 6.6e-34 149.8 103 69.9
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.3e-33 146.4 478 24.5
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.3e-31 141.4 187 47.1
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 5.2e-31 140.2 541 22.9
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.7e-29 135.2 78 79.5
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 6.6e-26 123.2 289 27.0
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 8.6e-26 122.9 547 22.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 7.3e-25 119.8 75 73.3
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 7.3e-25 119.8 73 74.0
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 6.8e-23 113.2 343 27.1
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.0e-18 99.4 95 57.9
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 1.5e-17 95.5 56 78.6
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 4.3e-17 94.0 132 38.6
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.8e-16 90.5 54 72.2
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 5.3e-15 87.0 84 52.4


User provided reference genes

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