Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.8e-185 652.5 351 100.0
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 7.2e-174 614.0 352 92.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.7e-157 558.9 325 90.2
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 2.3e-148 529.3 355 81.4
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.0e-144 516.2 375 76.3
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.5e-134 483.4 345 75.7
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 1.3e-130 470.3 376 69.7
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 1.8e-108 396.7 327 67.9
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 8.9e-108 394.4 361 62.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.0e-103 380.9 358 61.7
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.3e-103 380.6 353 61.2
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.7e-103 380.2 355 61.1
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.1e-103 378.6 357 60.5
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.3e-102 375.9 357 61.3
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.8e-101 372.1 349 60.5
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 6.9e-100 368.2 362 58.6
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 6.9e-100 368.2 341 64.2
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.2e-99 367.5 359 62.4
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-98 364.0 358 62.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.2e-97 359.4 397 54.9
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 7.1e-97 358.2 377 55.7
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 9.3e-97 357.8 358 59.8
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 2.1e-96 356.7 395 54.4
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.3e-95 354.0 360 55.6
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.7e-95 353.6 366 56.8
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 8.7e-95 351.3 358 61.2
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 2.5e-94 349.7 360 56.1
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.8e-93 345.5 344 58.1
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.0e-92 342.4 372 54.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 4.0e-92 342.4 357 56.0
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 5.8e-91 338.6 331 58.6
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 7.6e-91 338.2 404 53.0
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.7e-90 337.0 456 48.5
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.8e-90 335.9 367 54.0
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.1e-89 334.3 362 56.1
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 3.2e-89 332.8 350 54.9
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 3.5e-88 329.3 472 47.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.7e-87 325.1 458 46.5
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.1e-86 324.3 357 53.8
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.1e-86 324.3 446 45.5
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.5e-86 323.9 440 47.7
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 9.6e-86 321.2 286 60.8
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 4.8e-85 318.9 449 48.8
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 5.3e-84 315.5 448 44.6
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 2.0e-83 313.5 427 47.1
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 5.8e-83 312.0 443 47.2
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.0e-82 311.2 288 66.0
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.3e-82 310.8 369 52.0
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 3.8e-82 309.3 443 44.7
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.4e-81 307.4 458 45.9
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 3.2e-81 306.2 476 43.3
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.5e-80 302.8 467 43.7
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.6e-80 302.4 467 43.7
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 4.6e-80 302.4 334 53.6
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.0e-80 302.0 465 43.9
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 7.9e-80 301.6 491 43.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 7.9e-80 301.6 504 41.3
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.0e-79 301.2 428 47.9
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 3.0e-79 299.7 442 45.0
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 3.9e-79 299.3 290 59.0
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 5.1e-79 298.9 419 46.5
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 6.7e-79 298.5 414 47.1
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 8.7e-79 298.1 365 51.8
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.5e-78 297.4 519 40.7
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 3.3e-78 296.2 384 49.0
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 3.3e-78 296.2 384 49.0
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 9.6e-78 294.7 489 40.5
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.6e-77 293.9 497 40.8
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.1e-77 293.5 488 40.2
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 2.8e-77 293.1 496 40.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 8.2e-77 291.6 413 46.5
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 1.1e-76 291.2 416 46.9
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.4e-76 290.8 409 47.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.4e-76 290.8 534 38.6
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.8e-76 290.4 495 41.4
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.4e-76 290.0 496 39.9
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.4e-76 290.0 506 41.1
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-76 289.7 506 39.1
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 3.1e-76 289.7 358 53.9
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 4.1e-76 289.3 315 54.0
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 6.9e-76 288.5 352 51.4
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.0e-75 287.0 474 42.8
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 3.8e-74 282.7 452 43.4
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 3.2e-73 279.6 434 44.2
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 3.2e-73 279.6 498 40.0
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 7.1e-73 278.5 412 44.4
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.1e-73 278.5 341 51.9
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 9.3e-73 278.1 435 44.4
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.2e-72 277.7 406 44.3
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.1e-72 276.9 488 42.6
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.3e-71 274.2 439 43.3
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 2.3e-71 273.5 518 40.3
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 2.5e-70 270.0 460 40.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.6e-67 260.0 443 41.8
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 3.4e-67 259.6 309 52.1
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 3.4e-67 259.6 416 43.8
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 4.5e-67 259.2 445 42.9
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.9e-67 258.8 498 38.2
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-66 257.7 480 38.8
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 2.9e-66 256.5 407 43.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.2e-65 253.1 434 40.8
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 9.4e-65 251.5 318 50.0
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 9.4e-65 251.5 456 40.4
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 9.4e-65 251.5 453 40.4
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.8e-63 247.3 497 39.4
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 2.5e-62 243.4 385 42.6
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.4e-59 233.0 479 37.6
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 7.7e-59 231.9 353 42.8
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.0e-58 231.5 506 35.2
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.0e-58 231.5 506 35.2
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.3e-58 231.1 500 34.6
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.1e-57 228.0 453 38.2
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 4.2e-57 226.1 462 37.7
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 6.1e-56 222.2 183 66.7
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.5e-54 217.6 369 43.1
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.6e-54 216.9 321 46.1
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 9.7e-54 214.9 590 31.4
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.3e-53 214.5 145 74.5
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 8.2e-53 211.8 592 30.9
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.1e-48 197.2 156 67.9
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 7.0e-44 182.2 255 50.6
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.6e-43 180.3 152 63.8
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 9.8e-38 161.8 446 32.7
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.6e-35 154.5 371 35.6
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.8e-34 149.8 115 67.8
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.1e-28 131.7 214 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 7.7e-27 125.6 357 29.7
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.6e-24 117.9 166 46.4
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.2e-16 91.7 71 62.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.1e-15 87.0 71 59.2
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 4.0e-15 86.7 105 45.7
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 8.9e-15 85.5 151 38.4
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.6e-11 74.7 65 49.2


User provided reference genes

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