Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 4.8e-174 614.4 308 100.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 6.5e-171 604.0 308 98.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.2e-151 540.0 308 89.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.3e-147 526.6 306 86.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 2.1e-145 519.2 332 80.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.8e-144 516.2 266 97.4
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.3e-123 446.0 274 82.5
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 2.4e-120 436.0 267 80.9
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 5.2e-120 434.9 230 94.3
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 8.9e-120 434.1 266 80.8
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.7e-118 429.9 266 79.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.7e-118 429.9 271 78.6
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.4e-117 426.8 298 73.8
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.1e-117 425.2 276 76.1
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.1e-117 425.2 276 76.1
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 7.1e-117 424.5 263 79.5
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.6e-116 423.3 272 77.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.1e-116 422.9 295 74.2
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.7e-116 422.5 270 76.7
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 7.8e-116 421.0 276 75.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.3e-115 420.2 268 78.0
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.3e-115 420.2 265 77.0
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.3e-115 419.5 254 81.5
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.0e-115 419.1 270 75.9
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.5e-114 416.8 291 73.5
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.3e-114 415.6 307 70.0
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 4.3e-114 415.2 254 79.9
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 7.3e-114 414.5 283 72.4
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.1e-113 412.9 260 77.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 6.2e-113 411.4 293 72.7
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.8e-112 409.8 284 73.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.4e-112 409.5 289 72.3
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 4.0e-112 408.7 268 76.5
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 6.9e-112 407.9 297 70.0
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 6.9e-112 407.9 270 73.3
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.2e-111 407.1 262 77.1
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.0e-111 406.4 270 74.1
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.0e-111 406.4 272 74.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.6e-111 406.0 286 71.3
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.6e-111 406.0 270 73.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.4e-111 405.2 270 74.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 5.8e-111 404.8 272 73.5
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 9.9e-111 404.1 262 75.2
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 9.9e-111 404.1 270 73.3
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 9.9e-111 404.1 270 73.7
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.7e-110 403.3 285 71.9
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.8e-110 402.1 267 74.5
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 4.9e-110 401.7 291 69.4
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.9e-109 399.8 286 70.6
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.4e-109 399.4 294 68.0
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.4e-109 399.4 286 70.6
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.4e-109 399.4 270 73.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.2e-109 399.1 271 73.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.2e-109 398.7 267 70.4
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 9.3e-109 397.5 301 66.1
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.2e-108 397.1 268 72.0
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.2e-108 397.1 297 68.7
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.1e-108 396.4 292 67.1
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 2.1e-108 396.4 260 74.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.1e-108 396.4 265 73.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.7e-108 396.0 309 67.0
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.3e-107 393.7 295 68.5
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-107 392.5 296 68.2
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-107 392.5 296 68.2
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.9e-107 392.1 293 70.0
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 6.6e-107 391.3 286 69.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-106 390.2 295 67.8
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.5e-106 390.2 309 64.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.3e-106 389.0 267 70.8
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.3e-106 389.0 304 65.8
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.3e-106 388.7 230 83.0
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 4.3e-106 388.7 246 74.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 5.6e-106 388.3 261 74.3
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 7.3e-106 387.9 242 81.4
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 9.6e-106 387.5 272 69.9
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 9.6e-106 387.5 273 71.8
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-105 386.7 272 69.9
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.1e-105 386.3 258 72.5
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.6e-105 385.6 323 63.5
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 6.9e-104 381.3 310 66.8
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-103 380.6 271 70.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.0e-103 379.8 245 75.5
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.4e-103 379.0 245 73.9
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.8e-103 378.3 269 69.5
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.8e-103 378.3 269 69.5
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 7.6e-103 377.9 270 69.3
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 9.9e-103 377.5 273 70.3
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.7e-102 376.7 271 72.0
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-101 374.0 229 79.5
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.5e-100 369.0 393 53.7
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 4.6e-100 368.6 316 60.8
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 7.9e-100 367.9 230 77.4
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.3e-99 367.1 261 68.6
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.4e-93 346.3 261 67.0
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 3.5e-92 342.4 250 64.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 6.0e-92 341.7 287 61.7
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.3e-90 335.9 271 65.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 3.1e-88 329.3 249 63.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.0e-88 328.9 195 81.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.2e-86 323.2 237 69.2
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.8e-86 322.4 251 63.3
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-85 318.5 236 68.6
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 9.4e-77 291.2 209 73.7
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 3.0e-75 286.2 196 67.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.8e-73 279.6 206 69.9
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 6.3e-73 278.5 198 70.2
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 6.5e-70 268.5 222 63.5
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.8e-65 252.3 203 64.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.5e-63 246.1 170 70.6
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 7.7e-63 245.0 170 71.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-61 241.1 157 74.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.7e-60 236.5 195 59.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 3.0e-59 233.0 168 70.8
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.3e-56 222.2 130 83.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.1e-52 210.3 170 65.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-51 206.8 170 64.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-48 198.0 227 51.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.3e-46 191.0 122 73.8
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-45 184.9 157 63.1
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-44 184.1 159 62.3
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-44 184.1 157 63.1
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-44 182.2 156 62.8
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-44 181.8 159 62.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-43 180.3 173 57.8
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 6.8e-43 178.7 162 60.5
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-42 176.0 157 60.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-41 172.6 159 58.5
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 7.7e-39 165.2 108 76.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-38 164.5 144 61.8
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 9.5e-37 158.3 104 73.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-36 156.0 216 47.2
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 6.1e-36 155.6 228 43.0
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 5.2e-35 152.5 105 70.5
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 6.3e-33 145.6 157 53.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-32 144.8 160 53.8
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-32 144.8 160 53.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-32 144.1 123 62.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-32 143.3 122 62.3
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-31 139.8 94 75.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-31 138.7 107 67.3
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.3e-29 133.3 88 71.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-26 122.9 111 59.5
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-25 120.2 210 41.9
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.4e-24 117.9 73 76.7
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-20 103.2 66 78.8
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-19 101.7 133 45.1
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-18 96.7 103 51.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 4.9e-17 92.8 56 75.0
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 9.2e-16 88.6 89 56.2
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 9.2e-16 88.6 57 70.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-11 73.9 118 41.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 5.4e-08 62.8 111 36.0
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 7.8e-07 58.9 43 65.1
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 1.7e-06 57.8 49 59.2
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.9e-06 56.6 34 73.5
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 8.6e-06 55.5 35 71.4


User provided reference genes

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