Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 8.5e-70 266.9 139 100.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.0e-55 219.2 116 97.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.2e-53 210.7 116 94.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.9e-46 188.3 116 88.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.9e-25 119.0 102 67.6
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.7e-25 118.6 102 73.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.1e-24 117.1 98 67.3
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.4e-24 115.9 101 65.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.5e-23 112.1 102 65.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.8e-23 110.9 102 64.7
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.3e-22 109.4 102 60.8
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.8e-20 102.4 102 58.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 8.1e-20 100.9 105 55.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-19 99.4 103 56.3
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 5.2e-19 98.2 106 56.6
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.2e-18 97.1 87 62.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.6e-18 95.9 87 62.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.4e-18 95.1 99 58.6
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.9e-18 94.0 101 56.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-17 93.2 101 54.5
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.7e-17 93.2 101 55.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.2e-17 92.8 95 57.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.9e-17 92.4 102 54.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.9e-17 92.4 102 56.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-17 92.0 101 54.5
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.9e-17 91.7 112 50.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 8.4e-17 90.9 94 56.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 8.4e-17 90.9 106 52.8
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-16 89.4 101 54.5
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-16 89.4 101 53.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.2e-15 87.0 75 61.3
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.2e-15 87.0 96 58.3
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.2e-15 87.0 102 54.9
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 2.7e-15 85.9 82 56.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.6e-15 85.1 94 55.3
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.8e-15 84.3 94 56.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.0e-14 84.0 93 50.5
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.0e-14 84.0 94 56.4
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.3e-14 83.6 101 53.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-14 83.2 82 56.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.7e-14 83.2 102 51.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.3e-14 82.8 90 55.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.6e-14 81.3 83 54.2
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.6e-14 81.3 88 56.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 6.6e-14 81.3 100 59.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-13 79.7 100 49.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.5e-13 79.3 101 57.4
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-13 79.3 101 48.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.6e-13 77.4 85 52.9
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.1e-12 76.3 113 46.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.8e-12 75.9 99 46.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-12 75.5 100 48.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.2e-12 74.7 101 49.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.1e-12 74.3 95 48.4
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.1e-11 73.9 95 48.4
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.9 95 48.4
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.9 95 48.4
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-11 73.9 101 46.5
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.4e-11 72.8 97 47.4
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.4e-11 72.8 97 46.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.4e-11 72.8 87 52.9
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.1e-11 72.4 97 49.5
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.1e-11 72.4 94 47.9
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 6.9e-11 71.2 97 49.5
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 6.9e-11 71.2 99 44.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 6.9e-11 71.2 94 48.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 9.0e-11 70.9 99 46.5
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.2e-10 70.5 94 46.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.5e-10 70.1 95 48.4
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.0e-10 69.7 95 48.4
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 2.0e-10 69.7 91 46.2
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.4e-10 68.9 95 46.3
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.4e-10 68.9 97 45.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.4e-10 68.6 99 44.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.4e-10 68.6 77 48.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.4e-10 68.6 70 57.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 5.8e-10 68.2 84 50.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.8e-10 68.2 56 60.7
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.6e-10 67.8 93 48.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 7.6e-10 67.8 76 52.6
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 7.6e-10 67.8 80 50.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 9.9e-10 67.4 101 46.5
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-09 67.0 70 55.7
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.3e-09 67.0 94 47.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.7e-09 66.6 95 45.3
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.7e-09 66.6 101 43.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.7e-09 66.6 77 51.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.2e-09 66.2 110 40.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.2e-09 66.2 99 45.5
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.2e-09 66.2 119 42.9
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.9e-09 65.9 98 43.9
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 4.9e-09 65.1 67 55.2
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 6.4e-09 64.7 98 40.8
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.1e-08 63.9 74 45.9
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-08 63.5 104 43.3
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-08 63.2 94 42.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.9e-08 63.2 99 38.4
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.4e-08 62.8 97 44.3
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.4e-08 62.8 79 46.8
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.4e-08 62.8 95 46.3
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.4e-08 62.8 44 68.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-08 62.4 95 45.3
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.2e-08 62.4 95 45.3
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.2e-08 62.4 102 41.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.2e-08 62.0 86 45.3
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 4.2e-08 62.0 95 49.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 4.2e-08 62.0 41 68.3
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.2e-08 62.0 93 44.1
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-08 61.6 93 43.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-08 61.6 95 45.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-08 61.6 95 45.3
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.4e-08 61.6 101 43.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.4e-08 61.6 86 45.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 7.1e-08 61.2 111 41.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 9.3e-08 60.8 115 40.9
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.3e-08 60.8 96 42.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.5 93 44.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.5 93 44.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.2e-07 60.5 93 45.2
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.6e-07 60.1 46 65.2
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.6e-07 60.1 99 41.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.6e-07 60.1 104 42.3
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.1e-07 59.7 82 46.3
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 59.3 93 43.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.7e-07 59.3 86 47.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 3.5e-07 58.9 57 56.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.5e-07 58.9 93 44.1
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 4.6e-07 58.5 93 43.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.6e-07 58.5 89 43.8
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.0e-07 58.2 102 42.2
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 6.0e-07 58.2 88 44.3
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 6.0e-07 58.2 76 48.7
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 7.9e-07 57.8 106 41.5
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-06 57.4 86 41.9
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-06 57.0 93 41.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-06 57.0 93 41.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.7e-06 56.6 50 58.0
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 2.3e-06 56.2 77 44.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 2.3e-06 56.2 47 63.8
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.3e-06 56.2 102 38.2
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 3.0e-06 55.8 66 45.5
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 3.9e-06 55.5 92 42.4
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-06 55.1 95 41.1
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 5.1e-06 55.1 95 41.1
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 5.1e-06 55.1 65 41.5
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 6.6e-06 54.7 99 36.4
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 6.6e-06 54.7 99 36.4
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 8.7e-06 54.3 66 43.9


User provided reference genes

Program Settings