Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.3e-99 365.5 185 100.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 3.2e-96 355.1 185 97.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.5e-93 345.5 185 95.1
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.6e-79 298.1 194 80.9
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.6e-77 290.4 194 78.9
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 2.8e-76 288.9 194 79.9
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.9e-65 252.3 194 70.1
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.8e-65 251.9 195 70.3
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.3e-61 238.8 193 65.8
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.6e-60 236.5 193 66.3
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.4e-59 232.6 123 91.9
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 9.3e-56 220.7 157 69.4
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.1e-55 219.5 198 60.6
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.7e-55 219.2 137 77.4
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 4.6e-55 218.4 145 75.2
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 6.0e-55 218.0 172 66.3
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.9e-54 215.3 145 73.1
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 3.3e-53 212.2 179 64.2
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 5.7e-53 211.5 149 70.5
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 5.7e-53 211.5 192 60.9
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 7.4e-53 211.1 139 76.3
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 9.6e-53 210.7 147 72.1
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.3e-52 210.3 186 59.1
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 4.8e-52 208.4 179 62.0
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 6.3e-52 208.0 177 60.5
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 6.3e-52 208.0 186 59.7
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.1e-51 207.2 190 60.0
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.1e-51 207.2 140 72.1
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.4e-51 206.1 186 58.1
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.4e-51 206.1 192 58.3
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 4.1e-51 205.3 138 73.2
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 4.1e-51 205.3 183 62.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 4.1e-51 205.3 134 76.9
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 4.1e-51 205.3 129 76.0
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.2e-50 203.8 134 75.4
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.5e-50 203.4 129 78.3
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.0e-50 203.0 189 56.6
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.0e-50 203.0 145 73.1
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.0e-50 203.0 129 78.3
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.6e-50 202.6 134 75.4
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.6e-50 202.6 189 55.6
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.6e-50 202.6 133 75.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 4.5e-50 201.8 140 70.7
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.0e-49 200.7 117 82.9
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.3e-49 200.3 161 64.6
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 3.8e-49 198.7 152 65.8
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 6.5e-49 198.0 172 62.8
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 1.4e-48 196.8 139 69.8
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.9e-48 196.4 135 74.8
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.2e-47 193.7 103 84.5
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.6e-47 193.4 102 85.3
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.6e-47 193.4 103 84.5
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 2.1e-47 193.0 177 55.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.7e-47 192.6 166 59.6
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 4.6e-47 191.8 103 83.5
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.9e-47 191.0 160 61.9
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.3e-46 190.3 144 64.6
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.8e-46 189.9 159 62.3
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.3e-46 189.5 143 64.3
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 2.3e-46 189.5 161 60.2
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.3e-46 189.5 180 55.6
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 3.0e-46 189.1 184 57.6
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 3.9e-46 188.7 143 64.3
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 3.9e-46 188.7 158 60.8
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 8.7e-46 187.6 128 70.3
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.1e-45 187.2 127 70.9
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.1e-45 187.2 127 70.9
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.9e-45 186.4 191 51.3
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 2.5e-45 186.0 128 69.5
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 3.3e-45 185.7 156 60.9
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 4.3e-45 185.3 128 70.3
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.3e-44 183.7 135 68.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.3e-44 183.7 151 62.3
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.3e-44 183.7 166 58.4
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.3e-44 183.7 147 62.6
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 3.7e-44 182.2 137 67.9
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.4e-43 180.3 94 85.1
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.8e-43 179.9 142 63.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.1e-43 179.1 101 79.2
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.9e-43 177.9 139 64.0
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.5e-42 175.3 188 52.1
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 6.5e-41 171.4 111 73.0
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.4e-40 170.2 180 55.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.7e-39 166.0 167 56.9
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 3.6e-39 165.6 101 72.3
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 6.1e-39 164.9 104 76.0
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 6.1e-39 164.9 97 75.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 8.8e-38 161.0 122 65.6
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.6e-37 159.5 132 62.9
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 3.3e-37 159.1 157 58.6
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.4e-35 153.7 152 53.3
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.2e-34 150.6 170 54.1
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.4e-34 149.1 77 90.9
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.9e-32 143.3 72 86.1
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.2e-31 140.6 76 81.6
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.1e-31 139.8 140 55.0
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.6e-29 132.9 103 57.3
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 5.7e-29 131.7 141 51.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.8e-28 128.6 129 48.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.3e-27 125.2 154 46.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-24 117.5 135 43.7
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 1.1e-24 117.5 88 63.6
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 9.4e-24 114.4 93 54.8
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 86 70.9
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 86 70.9
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 86 70.9
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.6e-23 113.6 86 70.9
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.4e-22 110.5 73 69.9
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.4e-22 110.5 84 69.0
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 8.8e-22 107.8 55 90.9
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.8e-20 102.8 51 92.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 4.8e-20 102.1 144 45.8
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 8.2e-20 101.3 49 87.8
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 4.1e-19 99.0 90 53.3
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.0e-18 96.7 80 62.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.3e-17 94.0 52 82.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.0e-14 82.8 145 37.9
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-13 78.2 49 65.3
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.6e-10 70.5 41 75.6
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.0e-10 70.1 59 61.0
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 5.9e-10 68.6 111 47.7
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 8.6e-09 64.7 57 64.9
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 9.5e-08 61.2 63 52.4
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.0e-07 58.2 40 72.5
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.0e-06 57.8 67 49.3
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.0e-06 57.8 67 49.3
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 3.0e-06 56.2 84 41.7


User provided reference genes

Program Settings