Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.1e-233 812.0 402 100.0
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 6.0e-209 730.7 366 98.9
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.5e-204 714.5 366 96.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.2e-202 708.0 402 88.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-198 696.4 402 86.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 4.5e-196 688.0 402 85.3
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.2e-194 681.8 402 84.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 9.4e-178 627.1 407 79.9
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 3.5e-164 582.0 406 71.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.0e-157 557.8 408 68.9
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.0e-156 556.2 407 68.6
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.0e-156 556.2 402 68.7
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.5e-156 555.1 402 67.9
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 5.9e-156 554.7 408 69.4
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.0e-155 553.9 385 70.9
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.0e-155 553.9 381 71.7
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.0e-155 553.9 408 67.6
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 2.2e-155 552.7 399 70.4
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.2e-155 552.7 385 70.4
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 6.5e-155 551.2 399 70.7
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 8.5e-155 550.8 406 66.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.1e-154 550.4 407 68.3
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.1e-154 550.4 407 68.6
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.9e-154 549.7 412 67.0
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 3.2e-154 548.9 408 68.1
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 7.2e-154 547.7 408 67.9
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 9.5e-154 547.4 369 72.4
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.1e-153 546.2 380 69.2
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-153 546.2 383 68.9
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.7e-153 545.8 408 67.9
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.6e-153 545.4 411 67.2
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 3.6e-153 545.4 370 72.4
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-152 543.5 408 67.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.3e-152 542.7 380 68.7
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 8.8e-152 540.8 370 70.5
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 8.8e-152 540.8 392 67.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.6e-151 539.3 380 67.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.4e-151 538.5 406 66.0
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 5.7e-151 538.1 408 66.7
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 9.8e-151 537.3 400 67.2
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 9.8e-151 537.3 397 66.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.3e-150 537.0 368 69.3
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.7e-150 536.6 409 66.3
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.2e-150 536.2 368 69.3
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.2e-150 536.2 390 68.2
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.8e-150 535.8 401 67.3
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.7e-150 535.4 427 64.9
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.7e-150 535.4 371 71.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.9e-150 535.0 369 71.0
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.1e-149 533.9 390 67.9
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.8e-149 533.1 392 66.3
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 9.2e-149 530.8 404 67.3
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.5e-148 528.9 385 67.3
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.5e-148 528.5 372 69.6
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 5.9e-148 528.1 406 65.3
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 7.7e-148 527.7 390 68.5
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.3e-147 526.9 372 69.4
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 2.3e-147 526.2 408 65.9
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.3e-147 526.2 383 67.9
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.3e-147 526.2 379 67.3
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.9e-147 525.8 397 65.0
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 6.6e-147 524.6 440 62.7
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-146 522.7 386 65.5
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 2.5e-146 522.7 386 65.5
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 7.3e-146 521.2 405 63.7
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 9.5e-146 520.8 389 65.6
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 9.5e-146 520.8 389 65.6
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-145 520.4 388 66.0
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.2e-145 520.4 399 63.9
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.6e-145 520.0 379 66.2
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.6e-145 518.8 403 65.0
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.6e-145 518.8 400 66.8
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 4.7e-145 518.5 376 67.0
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 4.7e-145 518.5 411 63.7
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 8.0e-145 517.7 378 66.7
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.0e-144 517.3 378 66.7
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.8e-144 516.5 393 65.1
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.8e-144 516.5 392 64.0
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.0e-144 515.4 380 66.3
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 8.9e-144 514.2 398 63.6
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 8.9e-144 514.2 402 64.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.5e-143 513.5 378 65.9
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.5e-143 513.5 371 67.4
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 5.7e-143 511.5 367 67.0
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 7.5e-143 511.1 378 66.7
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 8.3e-142 507.7 375 66.4
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 8.3e-142 507.7 380 65.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.4e-141 506.9 377 67.4
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 4.1e-141 505.4 386 65.0
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 5.4e-141 505.0 405 62.0
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.3e-139 499.6 387 64.6
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.3e-138 495.7 369 64.8
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.8e-137 492.7 378 65.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 6.2e-137 491.5 371 65.0
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 7.5e-135 484.6 400 61.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.9e-134 482.6 470 54.5
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.2e-132 477.2 380 63.4
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.7e-131 473.4 382 61.0
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.6e-131 471.5 354 65.5
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.2e-129 467.2 388 61.3
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 3.1e-128 462.6 407 58.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-127 460.3 345 66.4
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.3e-126 457.2 386 58.3
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.7e-126 456.8 386 58.3
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 4.9e-126 455.3 384 59.4
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 8.3e-126 454.5 362 61.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 8.3e-126 454.5 399 57.6
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.4e-120 437.2 387 59.2
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 8.6e-115 417.9 378 54.0
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.6e-113 412.5 291 69.1
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.4e-112 410.6 380 54.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.0e-112 409.1 373 53.6
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.9e-110 402.9 293 67.2
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 6.4e-110 401.7 380 52.1
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 7.1e-109 398.3 293 66.2
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.1e-108 396.7 369 53.4
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.3e-107 393.3 405 54.3
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 8.7e-107 391.3 634 39.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 1.4e-104 384.0 352 58.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 9.0e-104 381.3 262 69.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 7.6e-103 378.3 267 65.5
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.4e-101 373.2 385 47.3
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.0e-99 367.9 256 68.0
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.1e-97 360.1 239 72.4
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 8.1e-97 358.2 250 66.0
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.1e-96 356.3 273 65.9
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 4.0e-96 355.9 274 65.3
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.8e-95 352.1 380 50.0
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.9e-94 349.0 248 64.1
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 6.4e-94 348.6 247 64.0
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 2.4e-93 346.7 249 66.3
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.2e-87 327.8 401 46.4
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.9e-86 323.2 250 66.0
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.5e-78 295.4 191 71.7
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 8.5e-78 295.0 357 45.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 7.7e-63 245.4 158 73.4
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.5e-61 240.4 284 50.0
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 3.2e-53 213.4 235 50.2
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 6.7e-51 205.7 213 48.4
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.0e-46 189.5 130 72.3
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 9.1e-40 168.7 115 66.1
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.1e-36 157.5 401 31.2
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 2.8e-36 157.1 156 51.3
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 4.0e-35 153.3 128 60.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.5e-34 151.4 106 66.0
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.1e-29 135.2 399 28.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 3.3e-29 133.7 295 31.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.6e-28 131.3 174 45.4
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-26 124.0 100 58.0
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.0e-22 112.1 70 65.7
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 4.3e-21 106.7 410 26.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 3.6e-20 103.6 93 57.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 6.8e-19 99.4 93 54.8
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 7.5e-18 95.9 93 53.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.7e-17 94.7 76 60.5
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 9.9e-10 68.9 54 57.4
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.2e-09 67.8 52 57.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 3.2e-08 63.9 55 52.7
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.2e-08 63.9 70 50.0
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 6.0e-07 59.7 43 69.8
CAN.G21.22 Capsicum annuum HOM05D003911 ORTHO05D115628 1.0e-06 58.9 57 52.6


User provided reference genes

Program Settings