Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 1.7e-148 529.3 263 100.0
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 9.6e-147 523.5 263 98.9
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 1.2e-146 523.1 263 98.9
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 1.2e-120 436.8 259 83.4
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 6.7e-100 367.9 228 81.6
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 3.2e-94 349.0 207 84.5
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 2.0e-91 339.7 229 74.7
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 1.0e-87 327.4 264 61.0
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 2.2e-82 309.7 273 59.0
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.7e-82 308.9 267 59.2
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 4.8e-82 308.5 259 58.7
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 4.1e-81 305.4 277 57.4
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 5.3e-81 305.1 268 58.6
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 5.3e-81 305.1 268 58.6
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 2.7e-80 302.8 268 55.2
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.7e-80 302.8 270 58.1
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 9.4e-78 294.3 265 57.4
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 3.6e-77 292.4 266 57.9
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.0e-76 289.3 263 53.6
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 4.8e-74 282.0 277 56.0
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 7.0e-73 278.1 269 55.0
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 2.7e-72 276.2 278 54.3
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 1.0e-71 274.2 270 50.4
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 2.9e-71 272.7 250 54.4
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 6.5e-71 271.6 284 52.5
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.5e-70 270.4 227 60.8
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 4.2e-70 268.9 290 52.1
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 1.6e-69 266.9 257 54.9
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 1.8e-68 263.5 224 59.8
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 6.8e-68 261.5 268 50.0
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 8.9e-68 261.2 270 51.1
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.5e-67 260.4 271 52.8
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 4.4e-67 258.8 257 53.7
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 1.3e-66 257.3 269 49.8
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 1.3e-66 257.3 266 52.6
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 2.8e-66 256.1 300 45.0
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 7.0e-65 251.5 219 55.7
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 9.2e-65 251.1 256 51.2
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 1.3e-63 247.3 250 51.6
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 3.8e-63 245.7 282 47.5
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 5.0e-63 245.4 250 51.2
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 1.1e-62 244.2 250 51.2
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 2.1e-61 240.0 248 47.6
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 4.7e-61 238.8 282 47.5
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 4.7e-61 238.8 282 47.5
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.0e-60 237.7 206 54.4
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 1.4e-60 237.3 258 44.6
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.3e-58 230.7 269 44.6
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 1.7e-58 230.3 268 42.9
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 2.2e-58 229.9 279 49.5
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 6.4e-58 228.4 268 45.5
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 8.3e-58 228.0 253 46.6
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 2.4e-57 226.5 260 48.1
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 3.2e-57 226.1 273 45.1
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 2.0e-56 223.4 276 44.2
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 2.7e-56 223.0 267 46.4
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 2.7e-56 223.0 246 45.1
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 3.5e-56 222.6 268 46.6
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 7.8e-56 221.5 267 46.8
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 1.7e-55 220.3 267 46.4
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 1.7e-55 220.3 263 46.4
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 3.0e-55 219.5 285 41.4
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 6.6e-55 218.4 258 48.1
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 8.6e-55 218.0 269 45.4
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 1.1e-54 217.6 267 46.1
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 1.5e-54 217.2 269 45.4
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 1.9e-54 216.9 263 46.4
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 3.3e-54 216.1 269 45.0
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 4.3e-54 215.7 236 51.3
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 5.6e-54 215.3 256 49.2
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 7.3e-54 214.9 269 45.0
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 9.5e-54 214.5 269 45.0
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 3.6e-53 212.6 198 53.0
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 6.2e-53 211.8 268 47.8
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 8.9e-52 208.0 231 49.8
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 4.9e-50 202.2 254 43.7
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 1.4e-49 200.7 243 43.2
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.7e-42 177.2 268 39.2
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.2e-40 171.0 257 42.0
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 2.1e-37 160.2 236 42.8
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 1.9e-33 147.1 253 36.4
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 3.1e-28 129.8 116 55.2
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 3.1e-28 129.8 255 33.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.0e-27 127.1 131 51.9
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 2.5e-22 110.2 240 32.1
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 9.6e-22 108.2 122 45.1
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 1.1e-20 104.8 230 32.6
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 2.4e-20 103.6 241 28.2
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 4.0e-20 102.8 246 27.6
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 4.0e-20 102.8 246 27.6
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 5.3e-20 102.4 246 27.2
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 9.0e-20 101.7 247 28.3
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 1.2e-19 101.3 255 30.6
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 3.4e-19 99.8 246 26.8
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 3.4e-19 99.8 255 30.2
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 4.5e-19 99.4 246 26.4
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 5.8e-19 99.0 254 29.9
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 9.9e-19 98.2 237 30.0
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 1.7e-18 97.4 259 31.3
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 2.2e-18 97.1 255 30.2
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 2.9e-18 96.7 256 30.1
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 2.9e-18 96.7 106 52.8
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 8.4e-18 95.1 252 29.0
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 9.3e-17 91.7 254 26.8
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 1.2e-16 91.3 255 28.6
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 6.0e-16 89.0 241 28.2
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 6.0e-16 89.0 241 28.2
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 2.3e-15 87.0 80 50.0
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 5.1e-15 85.9 111 43.2
TPR.G18947 Trifolium pratense HOM05D006860 ORTHO05D009547 3.1e-12 76.6 72 50.0
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 4.0e-12 76.3 60 66.7
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 5.3e-12 75.9 58 62.1
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.7e-10 70.9 63 50.8
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 4.9e-10 69.3 57 56.1
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 6.4e-10 68.9 68 52.9
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 6.4e-10 68.9 231 24.7
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 8.4e-10 68.6 246 26.4
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.1e-09 68.2 68 51.5
Peaxi162Scf00111g00149 Petunia axillaris HOM05D000828 ORTHO05D000623 1.2e-08 64.7 232 25.0
SalBow8G2820 Salvia bowleyana HOM05D000828 ORTHO05D000623 4.6e-08 62.8 235 24.7
Migut.M00721 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.3e-07 61.2 233 23.6
CiPaw.10G060200 Carya illinoinensis HOM05D000828 ORTHO05D000623 2.3e-07 60.5 179 26.8
Migut.I00366 Erythranthe guttata HOM05D000828 ORTHO05D000623 3.0e-07 60.1 229 21.8
FvH4_6g11270 Fragaria vesca HOM05D000828 ORTHO05D000623 3.9e-07 59.7 232 24.6
FAN14G0600 Fragaria x ananassa HOM05D000828 ORTHO05D000623 3.9e-07 59.7 232 24.6
FAN02G1375 Fragaria x ananassa HOM05D003017 ORTHO05D003388 1.1e-06 58.2 229 24.9
FAN23G1352 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.1e-06 58.2 101 28.7
FAN05G4803 Fragaria x ananassa HOM05D003017 ORTHO05D003388 1.5e-06 57.8 232 24.1
FAN26G0989 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.9e-06 57.4 101 28.7
FvH4_1g25360 Fragaria vesca HOM05D000828 ORTHO05D000623 4.3e-06 56.2 241 25.7
FAN19G1830 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.3e-06 56.2 101 28.7
RcHm_v2.0_Chr3g0462811 Rosa chinensis HOM05D000828 ORTHO05D000623 4.3e-06 56.2 233 23.2
CDE10G0387 Ceratophyllum demersum HOM05D000828 ORTHO05D000623 5.6e-06 55.8 209 24.4
PGSC0003DMG400011102 Solanum tuberosum HOM05D000828 ORTHO05D000623 5.6e-06 55.8 187 25.1


User provided reference genes

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