Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 2.3e-104 382.5 225 100.0
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 2.3e-104 382.5 225 99.6
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 1.0e-101 373.6 225 97.8
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.3e-71 271.9 235 69.8
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 5.2e-69 265.0 233 68.7
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 5.2e-69 265.0 253 68.0
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 7.6e-60 234.6 228 64.5
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 6.4e-59 231.5 241 63.1
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 4.6e-57 225.3 227 59.9
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.7e-56 223.4 228 59.2
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 2.3e-56 223.0 229 59.8
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.9e-56 222.2 242 57.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.1e-56 221.9 225 59.6
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.5e-55 220.3 235 55.3
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.5e-55 220.3 227 57.3
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.6e-54 216.9 238 55.0
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 2.1e-54 216.5 238 55.5
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 3.6e-54 215.7 237 55.7
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 4.8e-54 215.3 238 60.1
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 6.2e-54 214.9 224 57.6
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 6.2e-54 214.9 247 54.7
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.4e-53 213.8 227 56.4
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 2.4e-53 213.0 237 56.5
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 3.1e-53 212.6 229 54.1
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 4.0e-53 212.2 233 56.2
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 5.3e-53 211.8 237 57.0
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 6.9e-53 211.5 227 55.9
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 2.0e-52 209.9 227 56.4
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 2.0e-52 209.9 232 57.8
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 5.8e-52 208.4 238 58.4
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 7.6e-52 208.0 237 56.1
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 9.9e-52 207.6 238 55.9
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.3e-51 207.2 226 60.2
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.2e-51 206.5 237 56.1
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.9e-51 205.3 235 52.3
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 6.4e-51 204.9 231 56.3
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 6.4e-51 204.9 237 53.2
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.1e-50 204.1 241 53.1
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 2.4e-50 203.0 237 57.8
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.2e-49 200.7 248 52.0
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 1.6e-49 200.3 232 53.4
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 3.5e-49 199.1 259 47.5
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 3.0e-48 196.1 222 55.0
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.9e-48 195.7 179 67.6
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 5.1e-48 195.3 251 47.8
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 6.7e-48 194.9 233 54.9
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 2.5e-47 193.0 226 54.4
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 7.4e-47 191.4 221 52.0
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.3e-46 190.7 240 50.0
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.6e-46 190.3 254 46.5
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.6e-46 190.3 236 51.7
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 3.7e-46 189.1 219 52.1
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 4.8e-46 188.7 229 50.7
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 4.8e-46 188.7 222 52.7
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 4.8e-46 188.7 255 47.1
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 1.1e-45 187.6 251 47.8
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 1.1e-45 187.6 230 53.0
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 2.4e-45 186.4 227 51.5
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 2.4e-45 186.4 238 50.8
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.0e-45 185.7 254 46.9
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.0e-45 185.7 254 46.9
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 9.0e-45 184.5 246 52.8
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 9.0e-45 184.5 242 49.6
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.2e-44 184.1 254 52.0
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 2.6e-44 183.0 234 49.1
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 3.4e-44 182.6 177 58.8
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 4.5e-44 182.2 252 51.6
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 4.5e-44 182.2 252 51.6
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 5.8e-44 181.8 255 46.7
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.2e-43 179.9 240 47.1
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 4.9e-43 178.7 252 45.6
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 4.9e-43 178.7 252 45.6
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 6.5e-43 178.3 160 64.4
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 8.4e-43 177.9 269 44.6
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 1.1e-42 177.6 252 47.2
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 9.3e-42 174.5 233 48.9
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.6e-41 173.7 240 53.8
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 7.9e-41 171.4 243 56.0
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 1.8e-40 170.2 240 48.3
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 3.9e-40 169.1 240 52.9
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.5e-39 167.2 182 54.4
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.9e-39 166.8 240 52.5
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 5.7e-39 165.2 233 47.2
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 9.6e-39 164.5 225 48.4
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.3e-38 164.1 227 46.7
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 2.1e-38 163.3 189 57.7
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 2.8e-38 162.9 229 49.3
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 6.3e-38 161.8 238 49.6
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 1.1e-37 161.0 228 50.4
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.4e-37 160.6 172 51.7
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.8e-37 160.2 240 48.3
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.2e-36 157.5 176 50.0
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.0e-36 156.8 236 50.0
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.4e-36 156.0 232 46.6
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 9.3e-34 147.9 224 42.0
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 1.6e-33 147.1 247 44.9
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.6e-33 147.1 229 42.8
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 3.0e-32 142.9 230 44.8
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 6.7e-32 141.7 224 46.0
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 3.7e-30 136.0 228 43.4
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 4.8e-30 135.6 196 46.4
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.9e-27 126.3 237 44.3
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 9.4e-26 121.3 263 35.7
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.1e-21 106.3 118 58.5
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 1.7e-19 100.5 181 40.3
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 1.7e-19 100.5 226 36.7
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 1.2e-17 94.4 106 52.8
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 4.7e-17 92.4 107 62.6
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 6.7e-16 88.6 54 81.5
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 2.0e-15 87.0 91 56.0
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.7e-14 84.0 143 38.5
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.7e-14 84.0 143 38.5
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 4.8e-14 82.4 51 76.5
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 5.3e-13 79.0 105 45.7
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 5.9e-12 75.5 167 37.7
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.1e-07 61.2 179 34.1
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 4.4e-07 59.3 96 36.5
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 7.5e-07 58.5 90 43.3
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 7.5e-07 58.5 101 39.6
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 6.3e-06 55.5 96 33.3
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 6.3e-06 55.5 56 53.6


User provided reference genes

Program Settings