Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 0.0e+00 1326.2 670 100.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 0.0e+00 1310.4 671 98.5
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 0.0e+00 1247.3 670 94.3
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 7.2e-308 1060.1 673 81.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.4e-282 976.1 678 74.9
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.1e-277 957.6 752 68.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 9.6e-268 926.8 677 71.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.6e-265 918.7 677 70.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.2e-254 883.2 694 68.3
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.1e-250 868.6 675 67.3
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.8e-208 728.8 464 78.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.1e-170 604.4 689 49.1
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.9e-167 593.6 690 50.3
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.2e-163 580.1 701 48.1
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.9e-163 578.9 701 48.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.5e-161 572.8 693 49.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.8e-161 571.6 690 49.6
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.1e-160 568.9 724 47.2
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.3e-159 566.2 692 48.3
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 9.5e-159 564.7 707 47.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.8e-158 563.1 698 47.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 7.8e-153 545.0 712 46.3
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.9e-152 542.7 709 45.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.8e-149 533.9 705 45.4
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.2e-148 531.2 714 45.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 9.9e-148 528.1 689 46.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.6e-145 520.8 684 43.4
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-145 520.0 345 74.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.1e-143 514.6 698 43.7
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 8.1e-142 508.4 699 43.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.1e-142 508.4 689 44.7
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 4.0e-141 506.1 728 42.9
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.3e-141 505.8 711 43.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.0e-140 503.8 689 43.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.7e-139 500.7 715 43.5
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.1e-137 493.8 656 43.6
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.9e-137 491.9 711 43.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.3e-136 491.1 716 42.2
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 9.6e-135 485.0 710 42.4
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 9.0e-133 478.4 713 42.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.9e-132 474.9 718 41.6
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.7e-131 474.2 714 42.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.2e-131 473.8 718 43.9
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.9e-131 473.4 718 41.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.8e-131 473.0 586 46.4
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 6.4e-131 472.2 690 43.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.2e-129 468.0 718 40.8
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-128 464.2 727 40.4
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-128 463.4 715 41.3
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 6.7e-128 462.2 705 42.1
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-127 461.5 557 49.0
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.3e-127 459.5 698 41.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.6e-126 457.6 711 39.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.1e-126 455.3 708 41.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 8.1e-126 455.3 703 39.8
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 9.0e-125 451.8 705 39.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.5e-124 451.1 714 40.1
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 5.8e-124 449.1 704 40.5
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.4e-123 445.3 707 40.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.4e-122 444.5 682 41.3
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.2e-122 443.4 679 40.1
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.1e-121 440.7 674 39.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.7e-121 440.3 691 40.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 4.6e-121 439.5 709 40.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.6e-121 439.5 696 41.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-120 438.3 725 40.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.9e-120 436.4 604 42.2
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.1e-119 434.9 720 39.4
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.5e-119 433.7 577 43.3
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.3e-119 433.3 553 48.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.2e-118 428.7 654 40.4
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.4e-117 427.2 718 39.3
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 6.5e-115 419.1 657 41.4
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 8.4e-115 418.7 684 38.5
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.0e-112 410.2 708 38.7
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.0e-112 410.2 704 38.6
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 5.7e-111 406.0 590 43.1
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 5.7e-111 406.0 705 40.0
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.7e-111 406.0 582 41.6
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.1e-109 400.2 592 40.5
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.0e-108 397.5 589 42.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.5e-107 392.5 699 37.9
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 6.5e-107 392.5 631 39.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.1e-106 391.7 683 37.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.9e-106 391.0 683 37.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 7.2e-106 389.0 688 39.1
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.6e-105 387.9 680 37.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.8e-104 384.4 619 40.9
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.3e-103 379.8 659 38.8
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.7e-103 379.4 718 36.2
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.3e-102 378.3 583 41.2
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.8e-102 376.3 718 36.2
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 6.3e-102 375.9 711 37.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 6.9e-101 372.5 594 38.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.1e-97 360.9 632 37.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.5e-92 343.2 202 82.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 9.4e-90 335.5 681 36.1
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.3e-88 330.9 553 39.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-81 308.1 686 35.9
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.1e-81 307.8 469 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.8e-80 304.7 726 31.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-79 302.0 684 33.5
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.8e-78 297.4 648 32.4
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-76 292.0 493 42.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.7e-76 290.8 456 39.7
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.5e-76 290.4 761 30.9
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.8e-75 287.0 495 37.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 7.2e-74 282.7 607 33.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.6e-73 281.6 627 32.9
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 8.0e-73 279.3 668 31.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.3e-72 277.7 529 36.3
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.8e-72 276.2 406 41.4
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 8.8e-72 275.8 556 36.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.4e-71 273.5 673 31.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.4e-71 273.5 673 31.8
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.7e-71 273.1 355 43.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.7e-70 270.4 478 37.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.2e-68 265.4 358 43.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.7e-68 262.7 684 32.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 8.6e-67 259.2 516 35.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.0e-60 238.0 467 35.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.9e-53 214.9 478 34.5
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.0e-52 209.9 436 33.7
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 7.1e-37 159.8 377 30.0
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-36 159.1 374 32.4
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.0e-35 156.0 259 42.1
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.3e-35 154.8 314 36.3
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.6e-35 152.9 234 40.6
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-33 149.1 211 38.9
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.6e-33 148.7 223 39.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.1e-32 144.4 187 48.1
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.0e-31 141.7 225 39.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.4e-31 141.0 449 29.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.2e-30 138.3 268 36.6
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 6.4e-30 136.7 228 41.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 6.4e-30 136.7 343 32.9
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.7e-28 131.3 236 38.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.5e-28 131.0 328 31.7
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.3e-27 128.3 169 43.8
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 7.3e-26 123.2 314 32.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.8e-25 120.6 219 37.0
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 8.1e-25 119.8 132 50.8
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.1e-24 117.9 351 31.1
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.0e-23 115.2 475 25.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 3.5e-20 104.4 648 26.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.4e-18 96.7 107 48.6
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.1e-16 91.3 97 45.4
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 6.9e-16 90.1 157 38.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 6.9e-16 90.1 221 32.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.6e-15 88.2 88 50.0
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.2e-14 85.1 101 44.6
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.2e-14 85.1 82 45.1
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 5.5e-13 80.5 129 42.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.5e-13 80.5 81 45.7
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.8e-11 75.5 101 41.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.0e-11 74.7 139 38.1
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.5e-10 71.6 48 60.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 4.8e-09 67.4 115 35.7
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.1e-08 66.2 162 32.7
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-08 66.2 55 52.7
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.3e-08 63.9 80 38.8
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 2.0e-07 62.0 120 33.3
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.6e-07 61.6 135 32.6
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 2.9e-06 58.2 145 33.1
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 6.5e-06 57.0 81 46.9


User provided reference genes

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