Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 1.7e-21 105.1 56 100.0
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 8.6e-21 102.8 55 98.2
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 3.1e-18 94.4 51 94.1
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 4.4e-17 90.5 49 95.9
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 7.5e-17 89.7 54 85.2
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 7.5e-17 89.7 54 85.2
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 3.7e-16 87.4 53 83.0
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 6.4e-16 86.7 53 81.1
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 8.3e-16 86.3 53 81.1
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 8.3e-16 86.3 52 82.7
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 8.3e-16 86.3 54 81.5
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.1e-15 85.9 53 81.1
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 1.9e-15 85.1 54 83.3
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 1.9e-15 85.1 49 89.8
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 1.9e-15 85.1 54 83.3
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 1.9e-15 85.1 53 81.1
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 1.9e-15 85.1 54 83.3
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 1.9e-15 85.1 53 79.2
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 3.2e-15 84.3 53 79.2
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 4.1e-15 84.0 54 81.5
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 4.1e-15 84.0 53 77.4
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 5.4e-15 83.6 56 73.2
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 1.2e-14 82.4 53 77.4
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 2.0e-14 81.6 53 79.2
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.5e-14 80.9 49 79.6
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 4.6e-14 80.5 48 81.2
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 6.0e-14 80.1 48 83.3
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 6.0e-14 80.1 53 71.7
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 7.8e-14 79.7 47 83.0
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 7.8e-14 79.7 49 77.6
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 1.0e-13 79.3 47 83.0
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.3e-13 79.0 47 83.0
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 1.7e-13 78.6 47 83.0
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 1.7e-13 78.6 48 79.2
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 1.7e-13 78.6 48 79.2
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 1.7e-13 78.6 48 79.2
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 3.0e-13 77.8 48 79.2
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 3.0e-13 77.8 53 73.6
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 3.9e-13 77.4 47 76.6
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 3.9e-13 77.4 47 76.6
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 5.0e-13 77.0 47 78.7
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 5.0e-13 77.0 49 75.5
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 6.6e-13 76.6 48 81.2
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 6.6e-13 76.6 48 81.2
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 6.6e-13 76.6 47 78.7
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 8.6e-13 76.3 48 77.1
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.1e-12 75.9 49 75.5
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 1.1e-12 75.9 56 73.2
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 1.5e-12 75.5 48 81.2
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 1.5e-12 75.5 59 67.8
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 1.9e-12 75.1 48 79.2
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 1.9e-12 75.1 48 79.2
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 1.9e-12 75.1 48 79.2
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 1.9e-12 75.1 49 75.5
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 1.9e-12 75.1 47 74.5
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 1.9e-12 75.1 50 72.0
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 1.9e-12 75.1 52 71.2
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 2.5e-12 74.7 47 72.3
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 2.5e-12 74.7 47 78.7
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 3.3e-12 74.3 50 72.0
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 4.3e-12 73.9 53 77.4
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 4.3e-12 73.9 47 74.5
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 5.6e-12 73.6 47 72.3
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 7.3e-12 73.2 54 66.7
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 9.5e-12 72.8 47 70.2
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 9.5e-12 72.8 54 74.1
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 1.6e-11 72.0 46 78.3
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 4.7e-11 70.5 53 71.7
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 4.7e-11 70.5 49 77.6
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 6.2e-11 70.1 44 79.5
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 6.2e-11 70.1 44 79.5
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 6.2e-11 70.1 44 79.5
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 6.2e-11 70.1 49 75.5
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 6.2e-11 70.1 50 68.0
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 6.2e-11 70.1 48 75.0
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 1.1e-10 69.3 48 72.9
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 1.4e-10 68.9 47 68.1
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 5.2e-10 67.0 45 80.0
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 5.2e-10 67.0 50 62.0
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 1.5e-09 65.5 47 70.2
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 1.5e-09 65.5 47 70.2
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 5.8e-09 63.5 38 86.8
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 9.8e-09 62.8 47 66.0
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 1.3e-08 62.4 46 69.6
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 3.2e-07 57.8 31 90.3
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 5.4e-07 57.0 57 56.1
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.2e-06 55.8 31 87.1
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 1.6e-06 55.5 49 55.1
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 2.7e-06 54.7 46 63.0


User provided reference genes

Program Settings