Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 4.4e-201 704.9 503 100.0
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.8e-170 603.2 468 96.2
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.6e-150 537.0 468 89.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 9.8e-100 368.2 505 64.6
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.9e-79 300.8 538 59.9
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.6e-78 296.6 542 59.2
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 9.6e-71 271.9 470 59.8
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.2e-34 150.6 209 48.3
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.0e-32 144.1 207 44.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.8e-30 137.5 170 51.8
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.1e-29 134.0 230 41.3
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.7e-27 128.3 198 44.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 3.8e-27 127.1 211 42.2
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.0e-27 126.7 217 43.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 6.5e-27 126.3 126 54.8
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 8.5e-27 125.9 171 46.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 8.5e-27 125.9 236 41.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.9e-26 124.8 195 43.6
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 3.2e-26 124.0 220 42.3
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.2e-26 124.0 212 42.5
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.5e-26 123.2 202 41.6
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.5e-26 123.2 220 41.4
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 5.5e-26 123.2 137 52.6
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 7.2e-26 122.9 138 50.7
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-25 122.1 172 48.3
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-25 122.1 172 48.3
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-25 122.1 134 51.5
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.2e-25 122.1 121 56.2
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.6e-25 121.7 122 52.5
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.6e-25 121.7 200 40.5
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.6e-25 121.7 195 40.0
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.7e-25 120.9 183 41.0
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.6e-25 120.6 140 49.3
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 4.7e-25 120.2 207 39.1
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 4.7e-25 120.2 183 44.3
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 8.0e-25 119.4 208 39.9
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 8.0e-25 119.4 208 40.4
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 8.0e-25 119.4 216 39.8
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 8.0e-25 119.4 199 41.2
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 8.0e-25 119.4 227 40.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.0e-24 119.0 126 52.4
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.0e-24 119.0 175 48.6
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.0e-24 119.0 124 52.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.8e-24 118.2 125 52.8
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-24 118.2 216 40.3
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.3e-24 117.9 165 45.5
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 3.0e-24 117.5 238 35.3
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.0e-24 117.5 126 53.2
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.0e-24 117.5 126 53.2
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.9e-24 117.1 210 41.0
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.9e-24 117.1 175 42.9
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.9e-24 117.1 223 41.7
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 5.2e-24 116.7 220 37.7
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 5.2e-24 116.7 116 54.3
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 5.2e-24 116.7 128 48.4
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 5.2e-24 116.7 198 42.9
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 5.2e-24 116.7 124 50.8
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 6.7e-24 116.3 126 54.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 6.7e-24 116.3 216 37.0
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 6.7e-24 116.3 141 47.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 8.8e-24 115.9 111 55.9
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 8.8e-24 115.9 174 48.3
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.8e-24 115.9 197 41.6
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 8.8e-24 115.9 189 41.3
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 8.8e-24 115.9 221 37.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.1e-23 115.5 201 40.8
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.5e-23 115.2 124 51.6
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.5e-23 115.2 202 40.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.5e-23 115.2 193 42.0
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.5e-23 115.2 197 41.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-23 114.8 201 39.8
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.0e-23 114.8 201 39.8
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.0e-23 114.8 125 52.8
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.0e-23 114.8 185 40.0
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 2.6e-23 114.4 195 41.0
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.6e-23 114.4 201 40.3
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 3.3e-23 114.0 184 39.7
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 3.3e-23 114.0 136 50.7
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.4e-23 113.6 220 38.6
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 5.7e-23 113.2 99 60.6
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 7.4e-23 112.8 228 38.6
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 7.4e-23 112.8 228 38.6
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.4e-23 112.8 145 47.6
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 9.7e-23 112.5 104 53.8
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.3e-22 112.1 147 46.3
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.3e-22 112.1 134 47.0
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.3e-22 112.1 204 37.7
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.3e-22 112.1 168 45.2
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.7e-22 111.7 215 39.5
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.7e-22 111.7 179 41.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.2e-22 111.3 212 38.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.2e-22 111.3 141 48.2
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.2e-22 111.3 193 40.4
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.8e-22 110.9 223 37.7
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.8e-22 110.9 205 42.9
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 3.7e-22 110.5 140 50.0
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 3.7e-22 110.5 140 50.0
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.7e-22 110.5 141 47.5
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 4.8e-22 110.2 204 40.2
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 4.8e-22 110.2 102 56.9
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 6.3e-22 109.8 142 48.6
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 6.3e-22 109.8 103 55.3
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.1e-21 109.0 141 46.8
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.4e-21 108.6 143 44.1
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 1.4e-21 108.6 207 39.6
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.8e-21 108.2 205 36.6
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.1e-21 107.5 205 37.1
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.3e-21 106.7 127 46.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 7.0e-21 106.3 132 47.7
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 7.0e-21 106.3 101 54.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 9.1e-21 105.9 205 36.6
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.1e-21 105.9 148 45.3
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.6e-20 105.1 88 59.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.0e-20 104.8 222 35.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.0e-20 104.8 174 42.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.0e-20 104.8 150 44.7
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 3.5e-20 104.0 209 42.1
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 7.7e-20 102.8 218 34.9
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.0e-19 102.4 141 44.0
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.0e-19 102.4 202 35.6
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-19 101.3 206 35.9
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 2.9e-19 100.9 105 53.3
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 5.0e-19 100.1 216 37.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.0e-19 100.1 130 46.9
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.9e-18 98.2 220 36.4
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.5e-18 97.8 207 37.2
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.2e-18 97.1 198 36.9
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.2e-18 97.1 198 36.9
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.2e-17 95.5 133 42.1
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 2.6e-15 87.8 110 38.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 2.6e-15 87.8 98 46.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 4.4e-15 87.0 127 39.4
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.2e-14 84.7 114 39.5
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 8.3e-14 82.8 140 36.4
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.6e-12 78.6 140 37.1
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.6e-12 78.6 97 43.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 2.2e-11 74.7 102 41.2
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.9e-11 74.3 110 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.5e-10 72.0 104 38.5
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.6e-09 67.4 53 60.4
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.2e-08 63.5 196 31.6
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 6.8e-08 63.2 215 30.7
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 9.8e-07 59.3 101 36.6
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 9.8e-07 59.3 201 29.4


User provided reference genes

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