Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 0.0e+00 1573.1 790 100.0
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 0.0e+00 1555.0 790 99.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 0.0e+00 1397.9 791 87.5
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 0.0e+00 1372.8 788 85.9
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 0.0e+00 1302.7 789 82.6
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 0.0e+00 1270.4 785 80.6
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 6.1e-306 1053.9 786 65.3
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 5.7e-304 1047.3 792 66.4
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 2.0e-301 1038.9 789 66.7
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 4.2e-299 1031.2 795 65.3
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 1.2e-298 1029.6 781 64.9
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 2.7e-298 1028.5 792 64.8
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.0e-292 1010.0 789 65.3
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 8.6e-292 1006.9 807 62.1
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 4.4e-288 994.6 799 61.6
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 5.4e-286 987.6 841 58.7
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 3.5e-285 984.9 792 61.0
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 2.3e-284 982.2 795 60.6
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 1.4e-281 973.0 789 63.0
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 1.2e-280 969.9 798 61.3
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 1.3e-279 966.5 791 62.5
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.9e-278 962.6 791 59.8
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.4e-278 962.2 803 60.9
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 9.2e-278 960.3 810 61.4
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 6.6e-276 954.1 791 59.3
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 2.5e-275 952.2 800 59.4
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 3.3e-275 951.8 795 59.7
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 7.3e-275 950.7 800 60.0
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 8.9e-273 943.7 788 59.0
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 1.3e-271 939.9 789 59.3
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 2.9e-271 938.7 788 60.3
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 3.0e-268 928.7 794 59.9
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 3.9e-268 928.3 791 59.2
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 6.6e-268 927.5 788 60.2
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 5.6e-267 924.5 804 59.3
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 9.5e-267 923.7 789 59.3
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 2.1e-266 922.5 789 59.3
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 5.2e-265 917.9 789 59.2
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 6.8e-265 917.5 635 71.8
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 1.5e-264 916.4 792 58.7
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 2.6e-264 915.6 793 58.0
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 7.6e-264 914.1 851 56.3
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 7.6e-264 914.1 787 58.2
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.3e-263 913.3 789 59.2
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 2.9e-263 912.1 792 59.6
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 1.2e-261 906.7 797 57.7
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 4.6e-261 904.8 791 59.3
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.0e-260 903.7 793 58.6
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 3.0e-260 902.1 849 54.4
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 6.6e-260 901.0 793 58.4
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 1.5e-259 899.8 791 58.0
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 2.5e-259 899.0 795 57.0
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 2.5e-259 899.0 791 56.6
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 3.3e-259 898.7 789 57.8
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 4.0e-257 891.7 819 58.6
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 5.8e-256 887.9 792 57.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 7.6e-256 887.5 795 58.7
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 1.3e-255 886.7 806 57.6
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 1.4e-254 883.2 804 56.3
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 1.2e-253 880.2 636 67.8
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 7.8e-253 877.5 807 55.3
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.5e-251 872.5 808 54.8
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 1.5e-248 863.2 788 56.2
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 1.2e-245 853.6 793 54.9
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 1.6e-245 853.2 791 54.9
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 4.6e-245 851.7 795 56.7
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 6.2e-242 841.3 792 53.4
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 1.1e-241 840.5 802 54.6
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 1.3e-239 833.6 743 58.4
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 2.9e-239 832.4 791 52.8
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 2.9e-239 832.4 793 55.0
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 1.4e-238 830.1 791 53.1
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 4.2e-238 828.6 791 52.5
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 2.3e-236 822.8 799 52.1
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 8.7e-236 820.8 796 52.9
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 5.6e-235 818.1 792 52.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.6e-234 816.6 794 52.6
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 6.2e-234 814.7 793 52.6
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 4.0e-233 812.0 803 53.4
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 4.8e-226 788.5 791 51.6
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 5.3e-225 785.0 762 52.6
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 5.3e-225 785.0 786 53.8
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 7.6e-224 781.2 798 52.9
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 8.4e-223 777.7 786 52.5
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 1.9e-222 776.5 788 52.9
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 4.6e-221 771.9 791 51.1
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 1.6e-213 746.9 788 48.2
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 1.1e-206 724.2 806 48.3
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.2e-205 720.7 580 60.5
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 5.0e-199 698.7 666 53.2
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 1.9e-198 696.8 644 55.3
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 4.7e-197 692.2 781 48.3
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 3.6e-173 612.8 805 42.7
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 1.5e-155 554.3 596 50.8
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.8e-149 533.5 786 43.5
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 6.8e-148 528.9 790 40.6
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 8.9e-148 528.5 784 40.4
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 1.4e-108 398.3 839 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 1.5e-94 351.7 844 32.7
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 3.7e-93 347.1 301 58.8
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 1.1e-89 335.5 256 65.6
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 2.5e-89 334.3 285 58.2
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 4.7e-88 330.1 285 57.5
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 1.1e-86 325.5 414 44.2
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 6.3e-85 319.7 253 63.2
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 1.2e-83 315.5 253 60.1
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.8e-74 283.9 275 54.2
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 2.3e-63 248.1 173 70.5
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.8e-56 224.6 193 58.0
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 3.0e-50 204.5 202 51.5
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 6.2e-48 196.8 207 49.8
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 4.1e-44 184.1 143 64.3
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-39 167.2 1003 21.5
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 2.1e-32 145.2 87 78.2
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 1.4e-31 142.5 255 36.9
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 2.5e-25 121.7 72 80.6
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 1.8e-23 115.5 115 51.3
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 1.8e-23 115.5 839 21.9
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 5.8e-14 84.0 170 33.5
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 3.9e-10 71.2 50 68.0
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 6.7e-10 70.5 49 67.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 6.7e-10 70.5 46 65.2


User provided reference genes

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