Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 9.7e-198 693.7 477 100.0
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 5.9e-163 578.2 478 85.1
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 8.6e-146 521.2 483 76.8
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.3e-138 497.3 427 89.0
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 6.8e-135 485.0 480 75.8
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.3e-122 444.1 476 75.4
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 6.4e-109 398.7 457 75.1
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 6.4e-109 398.7 478 73.0
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.6e-107 394.0 455 73.0
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 3.1e-71 273.5 481 52.8
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 1.3e-69 268.1 463 52.7
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.2e-65 255.0 475 57.5
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.4e-63 248.1 476 50.0
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.7e-61 241.1 446 54.3
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 2.2e-61 240.7 458 49.3
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 2.5e-60 237.3 443 52.6
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 1.6e-59 234.6 446 53.8
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.3e-58 230.7 477 54.3
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 4.0e-58 229.9 479 52.8
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 2.6e-57 227.3 460 55.4
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.7e-56 224.6 446 46.4
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 3.7e-56 223.4 448 46.9
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.7e-56 223.4 478 54.4
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 8.3e-56 222.2 448 46.9
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 3.1e-55 220.3 456 43.4
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 5.4e-55 219.5 450 46.0
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 1.7e-53 214.5 454 44.7
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.3e-53 214.2 471 52.2
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 3.8e-53 213.4 477 44.9
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 3.8e-53 213.4 480 51.0
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 3.8e-53 213.4 473 43.8
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 4.2e-52 209.9 477 53.2
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 5.5e-52 209.5 479 46.3
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 7.2e-52 209.1 483 53.2
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 9.5e-52 208.8 440 45.2
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 1.2e-51 208.4 474 46.2
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.6e-51 208.0 447 49.0
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.6e-51 208.0 483 53.0
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.1e-51 207.6 442 44.3
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 4.7e-51 206.5 479 46.3
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 4.7e-51 206.5 458 50.4
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 8.0e-51 205.7 446 45.5
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.8e-50 204.5 444 49.3
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.8e-50 204.5 477 52.6
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 2.3e-50 204.1 477 49.9
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 2.3e-50 204.1 477 49.9
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 2.3e-50 204.1 477 49.9
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 4.0e-50 203.4 448 46.7
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 2.0e-49 201.1 449 51.0
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 1.3e-48 198.4 421 55.6
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 2.2e-48 197.6 472 48.9
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.7e-48 196.8 483 43.9
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 6.3e-48 196.1 482 43.6
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 1.1e-47 195.3 397 36.3
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 2.4e-47 194.1 438 53.7
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 7.0e-47 192.6 436 39.9
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 9.2e-47 192.2 463 47.9
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 2.0e-46 191.0 479 44.1
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 1.7e-45 188.0 456 52.0
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 1.9e-44 184.5 393 50.9
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 2.5e-44 184.1 476 49.2
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.8e-42 177.9 441 43.8
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 2.9e-40 170.6 454 43.0
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 6.4e-40 169.5 476 42.0
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.1e-39 168.7 169 53.8
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 1.4e-39 168.3 456 45.6
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 2.4e-39 167.5 428 48.1
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 7.0e-39 166.0 463 45.6
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 3.5e-38 163.7 439 50.1
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 4.6e-38 163.3 479 41.8
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.3e-37 161.0 474 45.8
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 3.0e-37 160.6 479 46.3
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 3.9e-37 160.2 476 47.1
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.0e-37 159.8 171 49.7
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 1.9e-36 157.9 479 48.4
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 2.5e-36 157.5 474 48.7
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 3.3e-36 157.1 481 41.2
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 7.3e-36 156.0 474 44.9
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 9.5e-36 155.6 352 59.1
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.2e-35 155.2 452 49.3
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.2e-35 155.2 421 54.4
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.6e-35 154.8 476 42.6
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 4.0e-34 150.2 405 32.1
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 4.4e-33 146.7 474 43.2
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 7.5e-33 146.0 453 44.8
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 4.1e-31 140.2 444 42.3
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 7.0e-31 139.4 482 41.9
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.2e-30 138.7 170 44.7
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.7e-29 134.8 391 48.6
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 5.0e-29 133.3 451 46.8
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 1.1e-28 132.1 450 48.0
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.7e-27 126.7 141 47.5
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 4.7e-27 126.7 94 72.3
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.1e-26 125.6 135 48.9
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.1e-26 125.6 150 46.0
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 2.0e-25 121.3 343 60.1
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 1.3e-24 118.6 170 38.8
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.9e-24 116.7 125 45.6
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.1e-23 115.5 123 45.5
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.4e-23 115.2 144 42.4
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.2e-22 112.1 376 51.3
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 2.1e-22 111.3 412 28.4
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 1.9e-20 104.8 142 40.8
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 4.3e-20 103.6 188 35.1
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 9.5e-20 102.4 109 45.9
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 1.2e-19 102.1 145 40.0
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.6e-19 101.7 496 35.1
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 6.2e-19 99.8 378 44.2
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 8.1e-19 99.4 101 49.5
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 1.4e-18 98.6 115 47.0
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 4.0e-18 97.1 126 39.7
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 2.6e-17 94.4 150 36.0
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 3.4e-17 94.0 183 31.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.2e-16 91.3 109 45.0
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 3.8e-16 90.5 375 48.0
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 1.6e-14 85.1 165 29.7
Nitab4.5_0001438g0060 Nicotiana tabacum HOM05D006400 ORTHO05D008039 7.8e-14 82.8 54 77.8
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.0e-13 82.4 183 31.7
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 1.5e-12 78.6 235 50.6
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 5.6e-12 76.6 103 38.8
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 6.2e-11 73.2 76 51.3
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 1.1e-10 72.4 135 29.6
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 1.1e-10 72.4 118 35.6
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 1.1e-10 72.4 133 33.8
CARHR025470 Cardamine hirsuta HOM05D005622 ORTHO05D002854 5.8e-09 66.6 173 27.7
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.8e-08 63.9 61 49.2
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 2.4e-07 61.2 169 24.3
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 9.3e-07 59.3 200 23.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 9.3e-07 59.3 200 23.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 9.3e-07 59.3 200 23.5
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 1.6e-06 58.5 207 22.2
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.6e-06 58.5 93 34.4
ATR0743G184 Amborella trichopoda HOM05D007128 ORTHO05D009059 2.1e-06 58.2 122 29.5
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 2.1e-06 58.2 200 22.5
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 2.1e-06 58.2 182 22.5
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 3.5e-06 57.4 105 27.6
Ah.06g194230 Amaranthus hybridus HOM05D005622 ORTHO05D002854 4.6e-06 57.0 176 23.3
Ah.16g102020 Amaranthus hybridus HOM05D005622 ORTHO05D002854 4.6e-06 57.0 176 23.3
Migut.N00641 Erythranthe guttata HOM05D008810 ORTHO05D010971 6.0e-06 56.6 114 32.5
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 7.8e-06 56.2 153 25.5


User provided reference genes

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