Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 5.8e-181 637.5 335 100.0
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 5.4e-179 630.9 335 99.1
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.4e-171 605.5 335 95.5
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 6.0e-170 600.9 335 94.3
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.6e-165 585.5 335 92.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.9e-164 582.0 335 91.9
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.4e-163 578.9 332 91.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 7.9e-138 494.2 313 83.4
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.0e-132 477.2 313 79.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.9e-130 467.6 310 80.3
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 8.8e-129 464.2 310 79.4
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 3.3e-128 462.2 312 78.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 3.3e-128 462.2 313 78.3
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.2e-127 459.5 313 78.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 3.7e-127 458.8 314 76.8
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.0e-125 453.0 310 78.1
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.3e-124 450.3 307 76.9
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.7e-124 449.9 307 76.9
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 3.8e-124 448.7 314 77.4
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.8e-124 448.7 310 76.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 8.5e-124 447.6 308 78.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.4e-123 446.8 302 78.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.2e-123 445.3 302 78.5
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.6e-122 442.2 302 78.5
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 3.6e-122 442.2 321 73.5
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 6.1e-122 441.4 311 75.6
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 6.1e-122 441.4 304 76.3
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 6.1e-122 441.4 312 77.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 7.9e-122 441.0 307 76.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.0e-121 440.7 299 79.3
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.3e-121 439.5 314 75.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 3.9e-121 438.7 322 75.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-120 436.8 313 74.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.6e-120 436.0 314 74.2
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.6e-120 436.0 300 78.0
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 9.7e-120 434.1 311 76.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 9.7e-120 434.1 314 73.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.7e-119 433.3 314 73.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 8.2e-119 431.0 310 75.5
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.4e-118 429.5 314 74.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.4e-118 429.5 314 74.2
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 2.0e-117 426.4 302 75.8
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 2.6e-117 426.0 308 74.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 4.5e-117 425.2 308 74.7
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.5e-117 425.2 302 75.8
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 5.9e-117 424.9 307 75.2
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 7.7e-117 424.5 299 73.9
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.7e-116 423.3 314 72.6
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.2e-116 422.9 302 74.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.9e-116 422.5 299 75.9
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.0e-116 421.8 303 74.6
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 6.5e-116 421.4 309 73.1
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-115 420.6 309 73.8
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.1e-115 420.6 329 70.2
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.1e-115 420.6 310 73.2
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-114 416.8 311 72.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.1e-114 416.4 301 73.8
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 6.1e-114 414.8 338 68.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.0e-113 414.1 310 72.3
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 4.8e-111 405.2 304 72.4
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.2e-109 400.6 303 72.3
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 2.0e-109 399.8 301 73.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.7e-109 399.4 299 72.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.0e-108 397.5 299 70.6
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.3e-108 397.1 307 71.0
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 6.5e-108 394.8 308 72.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 8.5e-108 394.4 302 70.9
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-107 393.7 300 72.0
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.2e-107 392.5 299 69.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 3.2e-107 392.5 327 67.0
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.2e-107 392.1 304 69.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 5.5e-107 391.7 300 70.0
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 7.2e-107 391.3 303 70.3
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 9.4e-107 391.0 314 67.8
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.2e-106 390.6 295 72.2
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-106 390.2 303 68.6
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.6e-106 390.2 304 71.4
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-106 390.2 311 68.2
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 2.7e-106 389.4 318 66.7
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.1e-106 388.3 305 69.2
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 6.1e-106 388.3 321 67.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.0e-105 387.5 310 69.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.8e-105 386.7 299 69.2
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.3e-105 386.3 319 67.4
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 8.8e-105 384.4 310 68.7
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 2.0e-104 383.3 303 68.3
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.0e-104 383.3 304 68.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.0e-104 383.3 304 68.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.6e-104 382.9 304 68.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 5.7e-104 381.7 299 69.2
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 9.8e-104 380.9 296 70.3
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.7e-103 380.2 299 69.6
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.7e-103 380.2 299 68.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 2.2e-103 379.8 299 69.9
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.2e-103 379.8 326 66.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.2e-103 379.8 300 69.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.7e-103 379.0 309 68.6
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.7e-103 379.0 310 66.8
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 8.3e-103 377.9 311 66.6
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.1e-102 377.5 317 67.2
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.4e-102 377.1 312 66.7
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 9.1e-102 374.4 299 67.9
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-101 374.0 299 67.9
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.9e-101 371.7 299 68.6
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 2.3e-100 369.8 305 66.2
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.3e-100 369.8 305 66.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.0e-100 368.6 305 65.9
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 5.0e-100 368.6 304 67.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.0e-100 368.6 298 67.1
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.5e-99 366.3 246 77.6
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.5e-99 366.3 290 70.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 5.2e-97 358.6 298 66.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-96 357.5 296 68.2
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-96 357.5 298 66.4
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 3.7e-95 352.4 240 77.5
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 9.2e-94 347.8 307 64.2
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.3e-91 339.0 318 61.3
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.3e-87 327.4 304 61.2
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 5.8e-80 302.0 219 72.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.6e-72 276.6 299 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.2e-71 273.5 299 55.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 7.1e-62 241.9 302 49.0
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.2e-61 241.1 215 64.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.8e-61 238.4 214 61.7
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 7.8e-61 238.4 239 58.2
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 9.6e-59 231.5 296 49.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.0e-56 223.8 202 64.4
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.6e-56 223.4 302 45.4
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.5e-51 206.8 325 41.8
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.8e-50 202.6 321 45.5
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 8.1e-50 201.8 261 50.6
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.9e-46 190.7 294 42.2
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.1e-45 187.2 126 77.0
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 7.9e-45 185.3 126 76.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 8.4e-39 165.2 299 37.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.1e-34 150.6 309 36.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 7.6e-32 142.1 94 77.7
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.0e-31 141.7 129 61.2
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.9e-31 140.2 94 72.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 7.1e-30 135.6 129 59.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.2e-29 134.8 204 42.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.5e-29 133.3 227 40.5
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 7.6e-24 115.5 76 76.3
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.5e-23 112.5 174 47.1
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-20 104.4 70 78.6
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.3e-20 104.0 61 83.6
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.3e-20 104.0 111 52.3
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 3.0e-20 103.6 70 78.6
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 5.1e-20 102.8 164 41.5
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 6.7e-20 102.4 164 42.1
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 6.7e-20 102.4 164 42.1
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 6.7e-20 102.4 164 42.1
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 5.3e-17 92.8 63 77.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 2.2e-15 87.4 82 62.2
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.4e-14 84.7 103 51.5
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 3.2e-14 83.6 76 57.9
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 3.7e-10 70.1 40 87.5
Nitab4.5_0002610g0020 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.8e-10 69.7 73 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.9e-08 62.8 59 62.7


User provided reference genes

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