Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077410.4 Solanum lycopersicum HOM05D001931 ORTHO05D001891 2.2e-63 245.4 117 100.0
Sopen08g026000 Solanum pennellii HOM05D001931 ORTHO05D001891 5.7e-59 230.7 115 96.5
Glyma.11G040300 Glycine max HOM05D001931 ORTHO05D001891 1.5e-30 136.3 124 54.0
MELO3C003366.2 Cucumis melo HOM05D001931 ORTHO05D001891 2.8e-29 132.1 138 48.6
HanXRQChr15g0493311 Helianthus annuus HOM05D001931 ORTHO05D001891 1.2e-27 126.7 110 56.4
COL.COLO4_17124 Corchorus olitorius HOM05D001931 ORTHO05D001891 2.2e-26 122.5 117 53.0
VMungo1215G0653 Vigna mungo HOM05D001931 ORTHO05D001891 1.9e-25 119.4 119 47.9
Gorai.004G189600 Gossypium raimondii HOM05D001931 ORTHO05D001891 1.2e-24 116.7 119 48.7
Phvul.002G003400 Phaseolus vulgaris HOM05D001931 ORTHO05D001891 2.7e-24 115.5 111 49.5
FAN13G2157 Fragaria x ananassa HOM05D001931 ORTHO05D001891 3.5e-24 115.2 121 46.3
Aa31LG2G13260 Aethionema arabicum HOM05D001931 ORTHO05D001891 7.8e-24 114.0 112 50.0
Gohir.A08G160400 Gossypium hirsutum HOM05D001931 ORTHO05D001891 7.8e-24 114.0 119 47.9
Gohir.D08G180732 Gossypium hirsutum HOM05D001931 ORTHO05D001891 7.8e-24 114.0 119 47.9
Medtr5g013865 Medicago truncatula HOM05D001931 ORTHO05D001891 3.3e-22 108.6 124 42.7
Sc07g0008960 Simmondsia chinensis HOM05D001931 ORTHO05D001891 4.3e-22 108.2 118 44.9
AL1G46970 Arabidopsis lyrata HOM05D001931 ORTHO05D001891 2.1e-21 105.9 123 41.5
Prupe.5G049000 Prunus persica HOM05D001931 ORTHO05D001891 3.6e-21 105.1 111 45.0
Sp1g28250 Schrenkiella parvula HOM05D001931 ORTHO05D001891 3.6e-21 105.1 120 46.7
Carub.0001s3105 Capsella rubella HOM05D001931 ORTHO05D001891 6.2e-21 104.4 121 43.8
Actinidia25935 Actinidia chinensis HOM05D001931 ORTHO05D001891 1.1e-20 103.6 110 46.4
PSO541G4211 Papaver somniferum HOM05D001931 ORTHO05D001891 1.1e-20 103.6 116 41.4
CARHR032100 Cardamine hirsuta HOM05D001931 ORTHO05D001891 1.8e-20 102.8 117 43.6
PSO541G4670 Papaver somniferum HOM05D001931 ORTHO05D001891 1.8e-20 102.8 116 40.5
TWI81G0442 Tripterygium wilfordii HOM05D001931 ORTHO05D001891 3.1e-20 102.1 114 44.7
PSO675G1583 Papaver somniferum HOM05D001931 ORTHO05D001891 6.8e-20 100.9 116 39.7
BcaB04g17963 Brassica carinata HOM05D001931 ORTHO05D001891 1.2e-19 100.1 120 41.7
A08p09120 Brassica napus HOM05D001931 ORTHO05D001891 1.5e-19 99.8 120 41.7
Cc08_g01750 Coffea canephora HOM05D001931 ORTHO05D001891 4.4e-19 98.2 122 40.2
BraA08t32914Z Brassica rapa HOM05D001931 ORTHO05D001891 5.8e-19 97.8 119 42.0
Migut.J01214 Erythranthe guttata HOM05D001931 ORTHO05D001891 1.3e-18 96.7 114 43.9
AT1G32710 Arabidopsis thaliana HOM05D001931 ORTHO05D001891 1.7e-18 96.3 113 45.1
arahy.Tifrunner.gnm1.ann1.T7XISY Arachis hypogaea HOM05D001931 ORTHO05D001891 7.0e-17 90.9 88 51.1
arahy.Tifrunner.gnm1.ann1.TXEI0G Arachis hypogaea HOM05D001931 ORTHO05D001891 7.0e-17 90.9 88 51.1
MBI01_g34163_MAGBIO Magnolia biondii HOM05D001931 ORTHO05D001891 9.2e-17 90.5 104 43.3
Thhalv10009443m.g Eutrema salsugineum HOM05D001931 ORTHO05D001891 3.0e-15 85.5 110 41.8
ClCG09G012420 Citrullus lanatus HOM05D001931 ORTHO05D001891 1.5e-14 83.2 45 84.4
Duzib068G1260 Durio zibethinus HOM05D001931 ORTHO05D001891 2.3e-12 75.9 43 81.4
Lj2g0014865 Lotus japonicus HOM05D001931 ORTHO05D001891 3.1e-12 75.5 111 38.7
BolC8t47957H Brassica oleracea HOM05D001931 ORTHO05D001891 1.2e-11 73.6 117 36.8
CsaV3_3G049600 Cucumis sativus L. HOM05D001931 ORTHO05D001891 5.8e-11 71.2 39 79.5
Sed0007326 Sechium edule HOM05D001931 ORTHO05D001891 2.4e-09 65.9 38 76.3
Os02g0791400 Oryza sativa ssp. japonica HOM05D001931 ORTHO05D001891 9.2e-09 63.9 51 45.1
Eucgr.E00322 Eucalyptus grandis HOM05D001931 ORTHO05D001891 1.2e-08 63.5 51 43.1
MD16G1261200 Malus domestica HOM05D001931 ORTHO05D001891 1.0e-07 60.5 52 42.3
Mapoly0098s0035 Marchantia polymorpha HOM05D001931 ORTHO05D001891 1.0e-07 60.5 66 39.4
PRCOL_00002996 Prasinoderma coloniale HOM05D001931 ORTHO05D001891 1.0e-07 60.5 50 40.0
THA.LOC104809722 Tarenaya hassleriana HOM05D001931 ORTHO05D001891 1.7e-07 59.7 50 44.0
unitig_37.g12164 Utricularia gibba HOM05D001931 ORTHO05D001891 1.7e-07 59.7 50 42.0
Manes.18G064621 Manihot esculenta HOM05D001931 ORTHO05D001891 3.0e-07 58.9 50 44.0
CBR_g32315 Chara braunii HOM05D001931 ORTHO05D001891 5.1e-07 58.2 50 38.0
MELO3C011044.2 Cucumis melo HOM05D001931 ORTHO05D001891 5.1e-07 58.2 50 42.0
Os04g0498200 Oryza sativa ssp. japonica HOM05D001931 ORTHO05D001891 5.1e-07 58.2 50 40.0
GSVIVG01013246001 Vitis vinifera HOM05D001931 ORTHO05D001891 5.1e-07 58.2 37 70.3
PSO541G1285 Papaver somniferum HOM05D001931 ORTHO05D001891 6.6e-07 57.8 49 42.9
AagrBONN_evm.TU.Sc2ySwM_228.994 Anthoceros agrestis HOM05D001931 ORTHO05D001891 8.6e-07 57.4 50 36.0
ClCG08G011290 Citrullus lanatus HOM05D001931 ORTHO05D001891 8.6e-07 57.4 50 40.0
Lalb_Chr07g0180031 Lupinus albus HOM05D001931 ORTHO05D001891 8.6e-07 57.4 50 38.0
Pp3c24_6190 Physcomitrium patens HOM05D001931 ORTHO05D001891 8.6e-07 57.4 50 40.0
PSO541G6291 Papaver somniferum HOM05D001931 ORTHO05D001891 1.1e-06 57.0 49 42.9
Potri.005G162100 Populus trichocarpa HOM05D001931 ORTHO05D001891 1.1e-06 57.0 50 40.0
Sabra05G0122500 Salix brachista HOM05D001931 ORTHO05D001891 1.1e-06 57.0 50 40.0
BcaC07g39162 Brassica carinata HOM05D001931 ORTHO05D001891 1.5e-06 56.6 86 32.6
BcaNung07231 Brassica carinata HOM05D001931 ORTHO05D001891 1.5e-06 56.6 86 32.6
A08p28510 Brassica napus HOM05D000219 ORTHO05D000226 1.5e-06 56.6 84 33.3
C08p21550 Brassica napus HOM05D001931 ORTHO05D001891 1.5e-06 56.6 86 32.6
BraA08t34779Z Brassica rapa HOM05D000219 ORTHO05D001891 1.5e-06 56.6 79 34.2
Carub.0001s2198 Capsella rubella HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 38.0
CDE05G1260 Ceratophyllum demersum HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 40.0
CsaV3_2G029850 Cucumis sativus L. HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 40.0
Nn2g12558 Nelumbo nucifera HOM05D001931 ORTHO05D001891 1.5e-06 56.6 51 37.3
Psat0s1163g0240 Pisum sativum HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 40.0
Potri.002G100000 Populus trichocarpa HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 40.0
Sabra02G0078500 Salix brachista HOM05D001931 ORTHO05D001891 1.5e-06 56.6 50 40.0
unitig_578.g16190 Utricularia gibba HOM05D001931 ORTHO05D001891 1.5e-06 56.6 115 27.8
BcaB07g32256 Brassica carinata HOM05D000219 ORTHO05D001891 1.9e-06 56.2 50 38.0
Migut.N02880 Erythranthe guttata HOM05D001931 ORTHO05D001891 1.9e-06 56.2 50 38.0
MD13G1274100 Malus domestica HOM05D001931 ORTHO05D001891 1.9e-06 56.2 50 40.0
Manes.02G149600 Manihot esculenta HOM05D001931 ORTHO05D001891 1.9e-06 56.2 50 40.0
Sc23g0000370 Simmondsia chinensis HOM05D001931 ORTHO05D001891 1.9e-06 56.2 50 40.0
AL1G35970 Arabidopsis lyrata HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
AT1G22450 Arabidopsis thaliana HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
BolC8t49795H Brassica oleracea HOM05D001931 ORTHO05D001891 2.5e-06 55.8 86 33.7
CANSAT11G1179 Cannabis sativa HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
FvH4_4g10230 Fragaria vesca HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 36.0
FAN07G1760 Fragaria x ananassa HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 36.0
FAN12G0794 Fragaria x ananassa HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 36.0
FAN12G3556 Fragaria x ananassa HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 36.0
FAN22G0567 Fragaria x ananassa HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 36.0
Manes.14G163500 Manihot esculenta HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
PGR142G2287 Punica granatum HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
SMO351G0078 Selaginella moellendorffii HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 40.0
Sopen12g029770 Solanum pennellii HOM05D001931 ORTHO05D001891 2.5e-06 55.8 129 27.1
unitig_92.g28107 Utricularia gibba HOM05D001931 ORTHO05D001891 2.5e-06 55.8 50 38.0
Aa31LG7G6370 Aethionema arabicum HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 38.0
arahy.Tifrunner.gnm1.ann1.U0VU98 Arachis hypogaea HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 36.0
BcaB03g14203 Brassica carinata HOM05D000219 ORTHO05D001891 3.3e-06 55.5 50 38.0
BcaC06g34965 Brassica carinata HOM05D000219 ORTHO05D000226 3.3e-06 55.5 50 38.0
A07p14430 Brassica napus HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 38.0
C07p21240 Brassica napus HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 38.0
BolC7t42650H Brassica oleracea HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 38.0
Ciclev10002573m.g Citrus clementina HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 40.0
Gohir.D05G226700 Gossypium hirsutum HOM05D001931 ORTHO05D001891 3.3e-06 55.5 117 28.2
Potri.018G099900 Populus trichocarpa HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 36.0
Prupe.1G522200 Prunus persica HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 40.0
Sed0002634 Sechium edule HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 38.0
Sc14g0001050 Simmondsia chinensis HOM05D001931 ORTHO05D001891 3.3e-06 55.5 50 36.0
arahy.Tifrunner.gnm1.ann1.Q5FMS0 Arachis hypogaea HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
BcaC05g26170 Brassica carinata HOM05D000219 ORTHO05D001891 4.3e-06 55.1 50 36.0
C05p21550 Brassica napus HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
BolC5t30850H Brassica oleracea HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
CARHR022790 Cardamine hirsuta HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
DCAR_017937 Daucus carota HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
Nn1g00666 Nelumbo nucifera HOM05D001931 ORTHO05D001891 4.3e-06 55.1 111 33.3
Nn8g40231 Nelumbo nucifera HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
Sabra18G0086300 Salix brachista HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 36.0
Hund26981 Selenicereus undatus HOM05D001931 ORTHO05D001891 4.3e-06 55.1 50 40.0
MSTRG.24444 Avicennia marina HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 40.0
A09p42360 Brassica napus HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
BraA09t39714Z Brassica rapa HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
CAN.G12.18 Capsicum annuum HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 38.0
CDE05G0062 Ceratophyllum demersum HOM05D001931 ORTHO05D001891 5.6e-06 54.7 93 28.0
Cre06.g304350 Chlamydomonas reinhardtii HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 40.0
FvH4_5g36690 Fragaria vesca HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
FAN04G1420 Fragaria x ananassa HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
FAN08G0301 Fragaria x ananassa HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
FAN13G2228 Fragaria x ananassa HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
FAN18G0025 Fragaria x ananassa HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
MD08G1187700 Malus domestica HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
Nn1g05447 Nelumbo nucifera HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 38.0
Phvul.008G176600 Phaseolus vulgaris HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 38.0
RcHm_v2.0_Chr4g0405051 Rosa chinensis HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
SalBow2G2165 Salvia bowleyana HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 36.0
SEGI_08739 Sequoiadendron giganteum HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 38.0
THA.LOC104817816 Tarenaya hassleriana HOM05D001931 ORTHO05D001891 5.6e-06 54.7 50 34.0
Aqoxy2G03826 Aquilegia oxysepala HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
CANSAT25G2586 Cannabis sativa HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
Cpa.g.sc127.44 Carica papaya HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
CDE05G1670 Ceratophyllum demersum HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
Ca_05311_v3 Cicer arietinum L. HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
Ciclev10010074m.g Citrus clementina HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Cc06_g14120 Coffea canephora HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Dinv41312 Davidia involucrata HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Eucgr.B00038 Eucalyptus grandis HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Eucgr.C00220 Eucalyptus grandis HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 34.0
Gohir.A08G093300 Gossypium hirsutum HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Gohir.D08G097600 Gossypium hirsutum HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
HanXRQChr05g0163091 Helianthus annuus HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
Hma1.2p1_0325F.1_g126130 Hydrangea macrophylla HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 34.0
Lsat_1_v5_gn_6_104321 Lactuca sativa HOM05D001931 ORTHO05D001891 7.3e-06 54.3 101 28.7
Lj4g0007174 Lotus japonicus HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Lalb_Chr13g0300581 Lupinus albus HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
MD15G1373600 Malus domestica HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
Prupe.1G098600 Prunus persica HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
Sp1g19930 Schrenkiella parvula HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
TWI12G0142 Tripterygium wilfordii HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
VMungo0647G1669 Vigna mungo HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
GSVIVG01023725001 Vitis vinifera HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 38.0
GSVIVG01032620001 Vitis vinifera HOM05D001931 ORTHO05D001891 7.3e-06 54.3 50 36.0
CiPaw.15G047600 Carya illinoinensis HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
Cc10_g06750 Coffea canephora HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
COL.COLO4_12018 Corchorus olitorius HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
Dinv43310 Davidia involucrata HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Duzib093G1373 Durio zibethinus HOM05D001931 ORTHO05D001891 9.5e-06 53.9 75 33.3
Duzib168G1594 Durio zibethinus HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 34.0
ECA240G3125 Erigeron canadensis HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Migut.K00284 Erythranthe guttata HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Glyma.14G177100 Glycine max HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
HanXRQChr03g0066251 Helianthus annuus HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Manes.14G163400 Manihot esculenta HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Medtr4g129710 Medicago truncatula HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Nitab4.5_0000786g0110 Nicotiana tabacum HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
PSO782G5458 Papaver somniferum HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Peaxi162Scf00030g02219 Petunia axillaris HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 34.0
SGA_v2.0_scaffold28G11905 Striga asiatica HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
Thecc.08G103000 Theobroma cacao HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0
Thecc.09G159000 Theobroma cacao HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 34.0
TPR.G24845 Trifolium pratense HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Zm00001eb018980 Zea mays HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 36.0
Zm00001eb184450 Zea mays HOM05D001931 ORTHO05D001891 9.5e-06 53.9 50 38.0


User provided reference genes

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