Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 0.0e+00 1092.8 559 100.0
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 3.8e-312 1074.3 559 98.2
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 3.4e-295 1017.7 559 92.7
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.2e-287 992.6 559 90.3
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 8.2e-281 969.9 586 85.3
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 2.3e-275 951.8 497 97.0
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.8e-264 915.6 516 90.1
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.0e-243 846.7 559 77.1
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.6e-239 831.2 560 76.2
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.0e-238 830.1 560 75.2
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.3e-238 829.7 560 75.2
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 3.1e-235 818.5 560 73.4
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.5e-234 816.2 560 74.6
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 9.8e-234 813.5 562 75.3
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 1.3e-233 813.1 560 74.8
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 1.3e-233 813.1 561 73.8
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 8.3e-233 810.4 559 74.6
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.4e-232 808.9 559 75.0
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 2.0e-231 805.8 560 73.0
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 6.0e-231 804.3 557 73.4
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 6.0e-231 804.3 557 73.4
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.3e-230 803.1 561 73.6
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 2.3e-230 802.4 560 72.1
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.9e-230 801.6 562 72.8
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 5.0e-230 801.2 559 73.5
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 1.5e-229 799.7 556 74.3
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.5e-229 799.7 553 74.7
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.5e-229 799.7 562 73.3
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.9e-229 799.3 560 72.5
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 2.5e-229 798.9 559 72.8
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 2.5e-229 798.9 580 71.9
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 4.3e-229 798.1 553 74.5
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.2e-228 796.6 561 73.1
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 4.7e-228 794.7 560 73.2
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 4.7e-228 794.7 556 72.8
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 2.3e-227 792.3 560 72.3
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.1e-227 792.0 560 72.3
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 5.2e-227 791.2 561 72.5
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 2.0e-226 789.3 561 72.5
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.0e-226 789.3 578 70.4
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.6e-226 788.9 561 72.0
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.6e-226 788.9 559 73.2
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 7.5e-226 787.3 562 72.4
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 8.3e-225 783.9 562 71.9
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 8.3e-225 783.9 562 72.4
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 7.1e-224 780.8 561 72.4
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.2e-223 780.0 578 70.9
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 1.2e-223 780.0 560 71.1
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 4.6e-223 778.1 562 71.5
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 4.6e-223 778.1 562 71.5
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 7.8e-223 777.3 557 71.6
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.3e-222 776.5 564 71.8
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.9e-222 775.0 580 69.7
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 3.9e-222 775.0 559 71.0
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 5.1e-222 774.6 560 72.0
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 8.6e-222 773.9 562 70.5
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.9e-221 772.7 557 72.4
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 7.3e-221 770.8 560 70.0
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 7.3e-221 770.8 556 73.4
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 7.3e-221 770.8 539 75.0
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.2e-220 770.0 562 70.5
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 2.4e-219 765.8 562 70.1
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 4.0e-219 765.0 536 73.5
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 6.4e-217 757.7 569 69.1
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.6e-215 753.1 588 67.7
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.6e-215 753.1 559 70.3
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 2.7e-215 752.3 562 68.5
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.0e-214 750.4 559 68.0
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.1e-213 746.9 568 69.5
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 2.5e-213 745.7 567 69.0
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 7.3e-213 744.2 561 68.8
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.1e-212 742.7 562 68.1
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 6.9e-211 737.6 560 68.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 1.5e-210 736.5 559 69.2
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 9.9e-210 733.8 560 67.3
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-209 732.6 561 68.8
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 4.9e-209 731.5 558 67.0
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.2e-207 726.9 537 70.6
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 7.8e-207 724.2 558 66.8
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.9e-205 719.5 565 66.7
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 3.3e-205 718.8 509 72.3
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 5.6e-205 718.0 560 68.0
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 9.6e-205 717.2 560 67.3
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.6e-204 716.5 562 66.4
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 2.4e-203 712.6 560 66.1
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 5.3e-203 711.4 498 72.5
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 3.4e-202 708.8 560 65.5
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 7.6e-202 707.6 563 65.5
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 8.4e-201 704.1 500 72.6
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 8.4e-201 704.1 494 72.7
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.1e-200 703.7 560 65.5
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.4e-200 703.4 562 65.7
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.4e-200 703.4 560 66.4
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 4.2e-200 701.8 559 65.8
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.2e-199 700.3 561 64.9
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 1.1e-197 693.7 561 64.7
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.5e-197 693.3 559 65.5
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 3.3e-197 692.2 560 65.9
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 4.0e-195 685.3 560 65.2
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 9.0e-195 684.1 560 65.0
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 2.2e-193 679.5 561 64.3
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.4e-192 676.0 559 64.4
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 7.1e-192 674.5 559 64.2
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 2.7e-191 672.5 558 64.2
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 3.5e-191 672.2 560 64.1
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 3.5e-191 672.2 560 64.1
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 3.3e-189 665.6 542 64.9
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 7.4e-189 664.5 555 62.9
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 6.2e-188 661.4 537 60.3
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.0e-185 654.1 555 61.6
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 3.1e-171 605.9 561 59.5
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 1.0e-166 590.9 428 71.5
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 7.2e-160 568.2 507 60.6
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.7e-159 566.2 458 65.5
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.8e-155 553.5 569 53.1
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 2.9e-153 546.2 400 72.0
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.1e-152 544.3 554 54.3
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.6e-151 540.4 454 63.7
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 9.7e-149 531.2 546 54.0
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.0e-145 521.2 404 63.9
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 1.5e-144 517.3 571 52.4
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 2.5e-144 516.5 566 51.4
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 3.5e-138 496.1 363 73.0
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.3e-120 436.4 548 48.2
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 4.4e-117 426.0 407 57.7
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 7.3e-112 408.7 300 71.7
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 1.1e-110 404.8 568 45.6
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 3.4e-109 399.8 572 43.2
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.2e-108 397.1 281 71.2
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 8.9e-102 375.2 545 43.5
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 6.7e-73 279.3 219 67.6
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.3e-72 276.6 487 39.8
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 4.1e-54 216.9 376 42.8
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 5.5e-51 206.5 142 74.6
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 3.7e-47 193.7 142 72.5
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 2.6e-45 187.6 287 41.8
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 1.2e-42 178.7 147 63.9
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 8.0e-42 176.0 114 71.9
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.3e-36 158.7 292 35.3
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.9e-36 157.5 192 50.5
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.6e-34 151.8 108 70.4
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.3e-33 147.9 138 60.9
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 4.0e-33 147.1 101 71.3
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.4e-22 110.2 154 44.8
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 3.5e-21 107.5 87 60.9
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 7.7e-21 106.3 77 64.9
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 8.9e-17 92.8 96 54.2
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.4e-16 90.5 87 58.6
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-15 88.2 88 56.8
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 2.7e-13 81.3 204 30.9


User provided reference genes

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