Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.4e-221 772.7 399 100.0
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 5.2e-213 744.2 399 93.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.1e-207 726.5 399 94.2
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 6.0e-185 651.0 400 82.2
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 2.4e-181 639.0 400 80.0
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 3.1e-181 638.6 368 84.2
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 5.9e-132 474.9 397 57.4
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 5.9e-124 448.4 400 56.5
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 3.6e-121 439.1 394 56.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.8e-120 436.8 394 56.6
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.8e-120 436.8 346 60.1
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.2e-117 426.0 386 54.9
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 7.8e-116 421.4 360 56.1
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.2e-110 403.3 385 51.4
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 2.2e-110 403.3 473 45.7
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.9e-110 402.9 354 53.7
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 6.4e-110 401.7 395 50.6
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 6.4e-110 401.7 399 51.1
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 5.4e-109 398.7 340 56.8
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 7.0e-109 398.3 372 52.2
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.6e-108 395.6 397 50.4
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 7.8e-108 394.8 334 54.8
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.0e-107 394.4 344 53.8
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 3.0e-107 392.9 384 52.3
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 5.0e-107 392.1 333 55.6
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.2e-105 387.5 372 53.5
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 2.8e-105 386.3 362 52.5
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 4.7e-105 385.6 337 53.7
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.4e-103 379.4 359 51.3
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 5.8e-103 378.6 355 52.1
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 5.8e-103 378.6 338 52.4
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 3.7e-102 375.9 332 54.5
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 3.7e-102 375.9 219 84.9
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 6.4e-102 375.2 329 53.8
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 5.4e-101 372.1 355 51.5
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 4.6e-100 369.0 394 47.0
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 7.8e-100 368.2 351 51.9
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.3e-99 367.5 354 50.6
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.7e-99 367.1 352 53.4
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.9e-99 365.9 361 50.1
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 8.6e-99 364.8 375 48.5
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 1.5e-98 364.0 346 50.6
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 3.3e-98 362.8 368 50.3
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.2e-97 360.9 358 50.6
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.2e-97 360.9 388 47.4
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.2e-97 360.9 361 50.4
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.6e-97 360.5 349 51.0
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 6.2e-97 358.6 353 49.6
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 1.1e-96 357.8 337 52.8
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.8e-96 357.1 365 50.7
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 2.3e-96 356.7 391 46.0
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 3.1e-96 356.3 360 48.3
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.5e-95 354.0 362 49.4
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 2.0e-95 353.6 386 46.4
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 3.4e-95 352.8 372 47.8
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 3.4e-95 352.8 372 47.8
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 5.8e-95 352.1 344 52.0
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.7e-94 350.5 372 47.3
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.7e-94 350.5 348 48.3
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.9e-93 347.1 354 49.2
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 1.9e-93 347.1 343 49.3
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 2.4e-93 346.7 372 47.0
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.2e-93 346.3 363 49.3
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.6e-92 344.0 358 48.0
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.6e-92 344.0 292 53.8
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 3.5e-92 342.8 340 49.1
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-90 337.8 369 48.2
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 3.3e-90 336.3 347 45.5
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.3e-90 335.9 354 50.6
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 4.3e-90 335.9 369 45.8
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 5.6e-90 335.5 359 46.5
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.2e-89 334.3 396 46.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 3.6e-89 332.8 355 46.8
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 4.7e-89 332.4 358 45.3
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 4.0e-88 329.3 388 45.1
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 6.8e-88 328.6 390 44.9
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.8e-87 325.5 376 45.7
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.2e-86 323.6 380 45.5
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.2e-86 323.6 331 49.8
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 2.9e-86 323.2 351 50.1
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 3.8e-86 322.8 466 38.0
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.3e-83 314.3 354 45.2
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.3e-83 313.5 374 43.6
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.0e-83 313.2 348 45.7
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.3e-82 309.7 388 44.3
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.1e-77 294.7 294 50.3
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.7e-76 290.0 340 44.7
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 4.3e-74 282.7 334 43.4
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 2.7e-68 263.5 315 43.5
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 6.7e-67 258.8 258 48.4
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 4.3e-66 256.1 245 49.8
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 4.8e-65 252.7 397 38.8
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 2.6e-63 246.9 335 37.3
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.8e-57 226.1 298 44.0
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 5.3e-56 222.6 334 38.0
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.0e-55 220.7 183 55.2
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 5.9e-55 219.2 318 37.1
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 3.8e-54 216.5 252 44.0
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.2e-53 212.2 247 43.3
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.6e-52 209.5 200 54.5
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.1e-48 198.4 284 37.7
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.0e-47 194.1 217 44.2
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.7e-46 191.0 141 68.1
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.8e-46 189.9 166 57.2
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 5.3e-40 169.5 131 62.6
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.9e-36 155.6 307 32.9
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 1.4e-35 154.8 247 34.0
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.8e-35 154.5 229 38.4
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 8.8e-27 125.6 204 33.8
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 8.8e-27 125.6 126 46.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 1.1e-21 108.6 185 37.8
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.6e-20 104.8 251 28.3
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 4.1e-16 90.1 286 25.2
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 5.4e-16 89.7 91 42.9
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.9e-13 81.3 86 37.2
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 2.5e-13 80.9 100 41.0
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.0e-11 73.6 71 42.3
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.0e-11 73.6 70 41.4
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.5e-07 60.5 90 43.3
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.5e-07 60.1 98 40.8
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.9e-07 59.7 98 40.8
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 7.7e-07 59.3 90 42.2
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 1.3e-06 58.5 111 35.1
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 2.3e-06 57.8 51 51.0


User provided reference genes

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