Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.7e-272 940.3 460 100.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.8e-258 894.8 438 98.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.6e-237 825.9 434 91.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.6e-232 808.5 434 88.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.0e-228 796.6 456 85.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.7e-212 740.7 434 80.6
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.5e-211 738.8 434 80.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.7e-207 726.1 437 78.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.2e-207 725.7 432 78.9
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.9e-207 724.5 437 77.8
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 6.5e-207 724.2 434 79.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 3.2e-206 721.8 437 77.6
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 7.1e-206 720.7 432 78.2
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 7.1e-206 720.7 437 77.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.1e-205 719.2 437 76.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.0e-204 716.8 432 77.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.0e-204 716.8 436 75.7
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.3e-204 716.5 442 76.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.8e-204 716.1 432 78.0
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.0e-204 715.3 439 76.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.9e-204 714.9 452 75.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 8.7e-204 713.8 437 77.6
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 8.7e-204 713.8 436 75.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 5.7e-203 711.1 436 75.5
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 5.7e-203 711.1 432 77.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 5.7e-203 711.1 435 77.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 9.6e-203 710.3 436 77.5
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 9.6e-203 710.3 436 77.1
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.3e-202 709.9 432 77.5
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-202 709.9 435 75.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-202 709.5 434 76.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.7e-202 708.4 436 76.1
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.3e-202 707.6 435 75.6
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 8.2e-202 707.2 435 76.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 8.2e-202 707.2 435 76.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 8.2e-202 707.2 433 76.4
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.4e-201 706.4 435 75.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.8e-201 706.1 437 74.8
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.1e-201 705.3 432 76.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 4.1e-201 704.9 437 75.1
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.0e-201 703.7 433 76.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.0e-201 703.7 433 76.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.5e-200 703.0 435 74.5
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.0e-200 702.6 433 76.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.4e-200 701.8 437 74.4
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.5e-200 701.4 434 75.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-200 701.0 427 76.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 5.9e-200 701.0 427 76.6
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.9e-200 701.0 433 75.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.9e-200 701.0 432 74.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-199 700.3 427 76.6
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.0e-199 700.3 427 76.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.7e-199 699.5 427 76.8
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 3.8e-199 698.4 436 75.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 5.0e-199 698.0 427 76.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.0e-199 698.0 436 74.8
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 8.4e-199 697.2 432 75.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-198 696.8 427 76.3
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.4e-198 696.4 437 74.8
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.2e-198 694.9 439 74.5
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.5e-198 694.5 430 74.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 7.2e-198 694.1 428 75.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 9.3e-198 693.7 427 75.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 9.3e-198 693.7 430 74.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.2e-197 693.3 437 75.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.6e-197 693.0 434 72.8
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.6e-197 693.0 431 74.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.6e-197 693.0 438 75.1
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.7e-197 692.2 442 74.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.0e-196 690.3 433 75.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.0e-196 690.3 437 73.7
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.3e-196 689.9 432 75.0
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.8e-196 689.5 496 67.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.0e-196 688.7 435 74.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 5.1e-196 688.0 427 74.9
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 8.7e-196 687.2 438 73.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.1e-195 686.8 442 73.8
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-195 686.8 473 69.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.5e-195 686.4 432 73.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.5e-195 686.4 434 75.3
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.9e-195 686.0 430 73.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 7.4e-195 684.1 440 72.5
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.3e-194 681.0 428 73.1
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 8.2e-194 680.6 430 73.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.1e-193 678.7 428 75.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.6e-192 675.6 432 74.1
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.7e-191 672.9 436 71.6
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.2e-191 672.5 508 65.7
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.2e-191 672.5 438 70.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 7.2e-190 667.5 436 70.4
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.6e-189 666.4 440 70.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.1e-189 666.0 408 75.5
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 6.1e-189 664.5 524 62.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.0e-188 662.1 408 77.0
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.1e-187 660.2 405 76.0
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 9.7e-187 657.1 391 78.5
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-185 653.7 403 75.7
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.8e-185 652.9 436 69.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.1e-185 651.7 425 71.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.1e-185 650.6 435 69.9
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.2e-184 650.2 418 73.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.2e-178 629.4 435 68.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.2e-178 629.4 425 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 4.5e-176 621.7 425 68.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.3e-175 620.2 441 66.7
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.3e-175 620.2 439 66.5
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.5e-175 617.5 441 66.9
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.8e-167 592.0 425 65.6
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.8e-164 580.9 438 64.6
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-163 580.5 434 67.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.0e-163 579.7 340 78.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-160 570.1 334 79.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 6.5e-159 564.7 431 60.8
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 4.2e-158 562.0 330 78.8
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.4e-156 557.0 386 70.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 5.2e-156 555.1 338 76.6
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.4e-153 546.2 355 72.7
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.1e-153 545.8 339 76.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 5.4e-153 545.0 425 58.1
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.6e-151 538.1 350 73.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.7e-149 531.9 430 59.8
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.2e-148 528.5 433 62.8
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 4.3e-134 482.3 296 76.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.1e-133 479.9 431 54.3
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.4e-123 446.0 381 59.6
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.6e-99 366.7 226 77.0
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.4e-99 366.3 351 53.8
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 6.2e-93 345.5 241 68.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.9e-86 323.9 228 67.5
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-73 280.0 196 65.8
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-68 263.8 176 68.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.0e-67 260.8 157 77.7
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.7e-61 241.1 144 78.5
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.0e-60 235.7 197 62.4
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.7e-54 216.1 133 75.2
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.8e-52 211.1 229 52.4
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-49 201.4 112 80.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.4e-46 189.9 107 78.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 5.0e-34 149.8 137 55.5
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.0e-31 140.6 90 72.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.2e-31 139.8 93 69.9
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-27 128.6 166 44.6
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.0e-27 127.9 82 69.5
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 3.6e-24 117.1 67 73.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.8e-23 114.8 245 34.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 4.4e-22 110.2 204 34.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-20 104.4 73 71.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.7e-19 100.9 66 65.2
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.6e-19 100.1 63 76.2
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.3e-15 87.8 57 66.7
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 8.9e-15 85.9 117 44.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.7e-10 71.6 94 44.7
FAN24G0773 Fragaria x ananassa HOM05D002051 ORTHO05D002041 2.3e-10 71.2 381 24.4
Gohir.D01G181400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 8.6e-10 69.3 396 22.5
Gorai.002G221000 Gossypium raimondii HOM05D002051 ORTHO05D002041 8.6e-10 69.3 396 22.5
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 8.6e-10 69.3 49 65.3
FvH4_2g26640 Fragaria vesca HOM05D002051 ORTHO05D002041 1.5e-09 68.6 381 23.9
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 1.9e-09 68.2 386 22.8
Migut.N03294 Erythranthe guttata HOM05D002051 ORTHO05D002041 3.3e-09 67.4 427 23.9
Nn5g28199 Nelumbo nucifera HOM05D002051 ORTHO05D002041 7.3e-09 66.2 389 23.1
MBI06_g20721_MAGBIO Magnolia biondii HOM05D002051 ORTHO05D002041 9.5e-09 65.9 391 23.8
Phvul.008G164800 Phaseolus vulgaris HOM05D002051 ORTHO05D002041 4.7e-08 63.5 387 22.2
Sc26g0000300 Simmondsia chinensis HOM05D002051 ORTHO05D002041 4.7e-08 63.5 391 23.3
Cfa015997 Carpinus fangiana HOM05D002051 ORTHO05D002041 6.2e-08 63.2 285 24.9
SGA_v2.0_scaffold28G12007 Striga asiatica HOM05D002051 ORTHO05D002041 6.2e-08 63.2 382 24.1
THA.LOC104817223 Tarenaya hassleriana HOM05D002051 ORTHO05D002041 6.2e-08 63.2 387 22.2
Lsat_1_v5_gn_8_24621 Lactuca sativa HOM05D002051 ORTHO05D002041 8.1e-08 62.8 384 23.2
AUR62010193 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.4e-07 62.0 263 22.8
FAN20G0736 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.4e-07 62.0 180 26.1
FAN27G1239 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.4e-07 62.0 180 26.1
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.4e-07 61.2 34 79.4
DCAR_017408 Daucus carota HOM05D002051 ORTHO05D002041 2.4e-07 61.2 247 26.3
Haze_00468 Corylus avellana HOM05D002051 ORTHO05D002041 5.2e-07 60.1 276 24.6
HanXRQChr06g0164451 Helianthus annuus HOM05D002051 ORTHO05D002041 5.2e-07 60.1 181 26.0
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 5.2e-07 60.1 86 43.0
unitig_744.g24556 Utricularia gibba HOM05D002051 ORTHO05D002041 5.2e-07 60.1 205 23.9
Hma1.2p1_2649F.1_g326132 Hydrangea macrophylla HOM05D000617 ORTHO05D000478 1.2e-06 58.9 257 25.7
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.5e-06 58.5 276 22.5
Dinv33637 Davidia involucrata HOM05D002051 ORTHO05D002041 2.6e-06 57.8 275 24.0
SEGI_10744 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 2.6e-06 57.8 271 25.1
CiPaw.05G223600 Carya illinoinensis HOM05D002051 ORTHO05D002041 3.4e-06 57.4 285 23.9
Aa31LG6G9230 Aethionema arabicum HOM05D002051 ORTHO05D002041 4.4e-06 57.0 387 22.5
CSS0001767 Camellia sinensis var. sinensis HOM05D002051 ORTHO05D002041 4.4e-06 57.0 279 21.5
Peaxi162Scf00038g01227 Petunia axillaris HOM05D000617 ORTHO05D000478 9.9e-06 55.8 212 23.1


User provided reference genes

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