Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.3e-259 897.5 465 100.0
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 9.0e-257 889.8 465 99.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.2e-238 827.8 470 91.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.2e-210 735.7 463 84.4
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.7e-195 684.5 451 81.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.8e-189 665.6 413 84.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.8e-156 554.7 291 96.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.6e-152 543.5 471 60.9
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.5e-150 537.0 471 59.9
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 7.3e-150 534.6 469 60.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 7.3e-150 534.6 463 61.3
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.6e-149 533.5 467 61.5
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 8.1e-149 531.2 469 60.3
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.0e-147 526.6 476 59.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 9.9e-147 524.2 460 60.9
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.9e-146 522.7 464 60.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 2.9e-146 522.7 471 58.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.6e-144 516.9 456 61.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.1e-144 516.5 464 58.6
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.3e-143 513.8 462 58.7
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.3e-143 513.8 463 61.3
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 8.7e-143 511.1 483 57.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.5e-142 509.6 463 58.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.3e-142 508.8 476 55.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.8e-141 506.1 456 59.4
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 3.1e-140 502.7 471 56.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.0e-140 502.3 451 58.8
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 5.3e-140 501.9 471 55.8
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.2e-139 500.7 473 56.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.5e-139 500.4 474 57.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.6e-139 499.6 471 57.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 7.6e-139 498.0 464 57.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 9.9e-139 497.7 465 57.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.7e-138 496.9 467 55.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.2e-138 496.5 471 58.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.9e-138 496.1 438 61.6
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.1e-137 494.2 473 55.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.3e-135 486.5 467 55.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 6.7e-135 485.0 469 56.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.9e-134 483.4 410 62.0
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.4e-132 477.2 473 55.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.3e-132 475.3 476 55.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 9.0e-132 474.6 467 54.0
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.6e-131 473.0 465 55.3
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.4e-131 472.6 476 55.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.5e-131 472.2 467 55.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-130 471.1 467 55.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-130 470.3 265 89.8
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.5e-129 465.3 462 54.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 5.5e-129 465.3 468 54.5
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.7e-128 463.0 497 52.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.3e-127 459.9 469 54.6
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.3e-126 456.1 468 51.1
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 4.3e-126 455.7 467 52.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.8e-125 453.0 467 53.1
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 4.8e-125 452.2 473 51.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.8e-125 452.2 380 62.6
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 6.3e-125 451.8 423 57.2
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.4e-124 449.9 480 52.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 9.0e-124 448.0 473 50.7
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 9.0e-124 448.0 467 50.7
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.4e-123 446.0 466 51.5
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 4.5e-123 445.7 468 50.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 7.6e-123 444.9 377 60.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 7.6e-123 444.9 467 50.3
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-122 444.5 471 53.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.3e-122 444.1 689 40.8
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.9e-122 443.0 467 50.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 6.5e-122 441.8 469 53.7
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.1e-121 441.0 467 50.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.5e-121 439.9 460 53.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.6e-120 437.2 468 50.0
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.6e-120 437.2 468 50.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.7e-120 436.4 468 48.9
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 6.1e-120 435.3 460 51.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 7.4e-118 428.3 367 59.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.7e-117 426.0 464 51.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.1e-116 424.5 551 47.4
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.4e-116 424.1 322 65.8
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 6.9e-116 421.8 434 51.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 5.9e-115 418.7 391 57.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.5e-113 413.3 397 53.7
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.2e-113 412.5 471 50.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.6e-112 409.1 478 50.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.7e-110 402.1 393 51.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.2e-106 390.2 552 44.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.6e-104 384.0 439 49.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.5e-102 377.5 478 45.8
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.6e-102 376.7 413 51.6
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 9.7e-102 374.8 497 45.3
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 9.7e-102 374.8 440 46.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.1e-100 371.3 421 50.6
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.4e-100 370.2 355 55.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.6e-99 366.7 291 63.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 5.5e-97 359.0 481 46.2
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 5.5e-97 359.0 389 52.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 4.8e-93 345.9 371 52.0
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.5e-91 339.3 471 43.9
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.5e-91 339.3 511 44.8
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.0e-90 338.2 254 66.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.2e-90 337.0 359 50.7
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-88 331.3 285 60.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 9.8e-86 321.6 338 53.3
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.8e-85 320.1 350 49.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.8e-84 317.4 297 58.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 6.1e-80 302.4 446 39.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.1e-80 302.4 377 46.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-79 301.6 312 53.2
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.8e-79 298.9 159 95.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.8e-77 293.5 240 62.1
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.6e-72 277.7 229 61.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.0e-71 275.0 312 52.9
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.4e-68 263.8 534 37.3
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-62 244.6 294 48.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.4e-62 243.0 142 86.6
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-59 234.6 303 46.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.3e-58 231.5 169 65.7
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 9.2e-44 182.2 355 40.6
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.6e-42 175.6 142 67.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.5e-41 174.1 552 31.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 9.6e-41 172.2 210 49.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.9e-37 159.8 563 28.8
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.4e-36 158.3 174 52.3
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.1e-33 148.7 103 68.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.3e-31 139.8 382 31.9
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-28 131.0 168 45.8
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 8.4e-21 105.9 127 47.2
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.4e-20 105.1 64 78.1
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 3.2e-20 104.0 130 44.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.5e-20 103.2 125 43.2
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.1e-16 91.3 84 58.3
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-16 90.1 139 41.0
PGSC0003DMG400017506 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.1e-15 89.0 52 90.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-12 79.0 72 54.2
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-12 79.0 72 54.2
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-12 77.8 72 52.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.2e-12 77.4 81 49.4
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.1e-12 76.3 115 42.6
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.3e-12 75.9 72 54.2
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.0e-10 70.9 62 53.2
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.1e-09 68.9 106 42.5
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.9e-06 56.6 45 62.2
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 7.6e-06 56.2 32 75.0


User provided reference genes

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