Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.5e-80 301.2 155 100.0
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 7.3e-78 293.9 153 99.3
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.4e-73 279.6 159 91.8
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 2.8e-61 238.8 154 84.4
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.0e-59 232.6 129 93.0
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.3e-58 229.9 157 79.6
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 9.2e-57 223.8 153 77.8
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.0e-55 220.3 149 79.2
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 9.0e-44 180.6 149 63.8
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 9.0e-44 180.6 127 70.9
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-43 179.5 127 70.9
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-43 179.5 127 70.9
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-43 179.5 127 70.9
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 4.4e-43 178.3 153 61.4
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 5.8e-43 177.9 130 72.3
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.9e-42 175.6 126 72.2
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 3.8e-42 175.3 127 69.3
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.1e-41 173.7 131 64.9
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.4e-41 173.3 128 68.8
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.4e-41 173.3 131 67.9
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.4e-41 173.3 131 67.9
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.9e-41 172.9 128 69.5
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 2.4e-41 172.6 146 61.0
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 4.2e-41 171.8 128 68.8
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 9.3e-41 170.6 128 65.6
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.6e-40 169.9 128 67.2
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 2.1e-40 169.5 132 65.9
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 2.1e-40 169.5 153 60.8
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 2.7e-40 169.1 127 67.7
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 3.5e-40 168.7 128 67.2
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 3.5e-40 168.7 128 67.2
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 4.6e-40 168.3 128 67.2
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 4.6e-40 168.3 128 67.2
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 6.0e-40 167.9 128 67.2
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 7.8e-40 167.5 127 67.7
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 7.8e-40 167.5 128 67.2
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.3e-39 166.8 128 67.2
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.7e-39 166.4 127 70.9
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 3.0e-39 165.6 134 64.9
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 3.0e-39 165.6 128 66.4
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 5.1e-39 164.9 131 67.2
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 5.1e-39 164.9 126 65.9
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 6.6e-39 164.5 128 66.4
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 8.7e-39 164.1 128 67.2
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.1e-38 163.7 127 63.8
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.5e-38 163.3 127 66.9
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 1.5e-38 163.3 127 67.7
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.9e-38 162.9 132 62.1
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.9e-38 162.9 127 64.6
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 2.5e-38 162.5 127 66.1
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 2.5e-38 162.5 149 59.1
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 2.5e-38 162.5 129 65.9
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 4.3e-38 161.8 128 66.4
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.3e-38 161.8 127 64.6
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 4.3e-38 161.8 127 64.6
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 5.6e-38 161.4 132 62.1
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 5.6e-38 161.4 132 62.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 5.6e-38 161.4 127 65.4
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 7.3e-38 161.0 129 62.8
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 9.6e-38 160.6 128 63.3
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 9.6e-38 160.6 149 59.7
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 2.1e-37 159.5 121 65.3
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 2.8e-37 159.1 145 60.0
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 2.8e-37 159.1 140 60.0
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 3.6e-37 158.7 127 62.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 3.6e-37 158.7 154 54.5
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 3.6e-37 158.7 127 64.6
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.6e-37 158.7 132 61.4
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 3.6e-37 158.7 127 63.8
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 3.6e-37 158.7 129 61.2
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 4.8e-37 158.3 130 59.2
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.2e-37 157.9 127 63.8
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 6.2e-37 157.9 127 63.8
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 6.2e-37 157.9 128 63.3
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 8.1e-37 157.5 127 65.4
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 8.1e-37 157.5 135 61.5
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.1e-36 157.1 132 60.6
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 1.1e-36 157.1 127 62.2
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 1.4e-36 156.8 129 65.9
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.8e-36 156.4 127 59.8
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 2.4e-36 156.0 127 65.4
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 4.0e-36 155.2 127 63.8
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 5.3e-36 154.8 127 63.0
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 5.3e-36 154.8 127 62.2
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 6.9e-36 154.5 129 60.5
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 9.0e-36 154.1 127 63.0
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 9.0e-36 154.1 126 61.9
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.2e-35 153.7 127 64.6
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-35 153.7 127 64.6
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.2e-35 153.7 130 62.3
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.5e-35 153.3 127 63.8
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.5e-35 153.3 127 59.8
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.5e-35 153.3 132 63.6
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 2.6e-35 152.5 129 61.2
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 3.4e-35 152.1 129 60.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-35 151.8 127 63.0
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 5.8e-35 151.4 127 63.0
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 7.6e-35 151.0 127 59.8
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 7.6e-35 151.0 127 64.6
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 2.7e-32 142.5 129 57.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.3e-31 140.2 139 56.1
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 3.9e-31 138.7 129 57.4
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 3.9e-31 138.7 126 54.8
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 1.5e-30 136.7 138 52.9
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 2.1e-29 132.9 83 78.3
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 1.4e-28 130.2 127 54.3
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 4.0e-28 128.6 127 56.7
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.9e-28 127.9 127 56.7
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 9.0e-28 127.5 129 52.7
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 4.9e-26 121.7 67 91.0
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 1.9e-25 119.8 104 58.7
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 8.2e-21 104.4 75 69.3
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.1e-20 104.0 128 49.2
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 9.0e-20 100.9 80 61.2
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 5.8e-19 98.2 128 43.0
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 1.1e-17 94.0 133 42.1
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 2.5e-17 92.8 127 45.7
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 8.2e-13 77.8 49 81.6
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 1.2e-11 73.9 130 42.3
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.2e-11 73.9 42 81.0
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.1e-09 67.4 68 51.5
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.9e-09 66.6 129 35.7
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 5.1e-07 58.5 77 42.9
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.5e-06 57.0 41 65.9
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 5.7e-06 55.1 77 40.3


User provided reference genes

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