Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.5e-293 1011.5 566 100.0
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 2.8e-284 981.5 567 97.7
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.7e-271 938.3 566 92.0
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 8.2e-196 687.6 568 73.1
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.7e-194 682.6 568 72.0
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 2.7e-186 656.0 568 70.1
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.4e-131 472.2 567 51.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.3e-129 466.8 586 51.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.5e-128 463.4 557 53.3
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.6e-127 460.7 573 50.8
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.1e-126 458.0 575 52.7
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.5e-125 454.1 567 49.4
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.3e-124 451.1 630 50.5
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.8e-124 449.5 568 50.5
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.4e-123 447.6 584 50.0
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.4e-123 446.8 578 50.9
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.4e-123 446.8 549 51.5
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 5.5e-123 445.7 574 50.9
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.1e-123 445.3 569 49.4
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 9.3e-123 444.9 567 51.9
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-122 444.5 568 50.5
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.2e-122 444.5 593 53.3
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.6e-122 444.1 572 49.8
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 4.6e-122 442.6 575 52.7
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 2.3e-121 440.3 569 49.0
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.3e-121 440.3 569 49.0
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.9e-121 439.5 568 50.4
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 5.1e-121 439.1 567 51.5
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.5e-120 437.6 568 50.0
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.5e-120 437.6 563 49.6
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.3e-120 436.4 573 49.7
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.6e-119 434.1 566 50.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.7e-119 433.0 581 49.6
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 6.2e-119 432.2 566 49.1
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.4e-118 431.0 568 49.5
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 9.0e-118 428.3 571 50.4
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.5e-117 426.0 566 47.9
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.7e-116 424.1 588 47.8
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 6.5e-116 422.2 379 62.0
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.4e-115 421.0 573 50.1
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 3.2e-115 419.9 571 48.2
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 5.5e-115 419.1 397 60.2
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.2e-114 417.9 379 62.8
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.7e-114 416.8 447 57.9
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 2.7e-114 416.8 556 50.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.5e-114 416.4 632 45.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 4.6e-114 416.0 569 49.4
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.0e-113 413.3 557 48.1
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 6.7e-113 412.1 584 47.3
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.1e-112 411.4 591 46.9
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 3.3e-112 409.8 380 60.3
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 4.3e-112 409.5 403 59.6
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 4.8e-111 406.0 590 47.8
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 6.3e-111 405.6 583 50.1
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 5.3e-110 402.5 573 47.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 3.4e-109 399.8 587 46.5
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 4.5e-109 399.4 574 48.6
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.0e-108 398.3 564 48.2
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 8.5e-108 395.2 569 47.8
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 8.5e-108 395.2 569 47.8
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 4.2e-107 392.9 588 46.9
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.6e-106 391.0 593 47.9
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.6e-106 391.0 583 46.3
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 4.6e-106 389.4 570 46.1
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.3e-105 387.9 574 48.4
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 3.9e-105 386.3 602 45.7
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 3.9e-105 386.3 586 45.9
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 8.7e-105 385.2 553 47.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 1.5e-104 384.4 389 57.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.5e-104 384.4 565 47.3
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.3e-104 383.3 579 46.5
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 4.3e-104 382.9 569 45.9
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 9.7e-104 381.7 611 45.3
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.3e-103 381.3 389 57.3
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 4.8e-103 379.4 594 46.3
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.1e-102 378.3 584 45.4
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.8e-102 377.5 569 46.6
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.4e-102 377.1 573 44.5
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 6.9e-102 375.6 568 45.6
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.0e-100 371.7 613 45.2
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.2e-100 370.5 576 46.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 5.0e-100 369.4 591 44.5
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 8.5e-100 368.6 578 46.0
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.1e-99 368.2 582 45.0
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 6.1e-98 362.5 588 44.7
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 7.9e-98 362.1 393 55.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.4e-97 361.3 585 44.1
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.8e-97 360.9 393 54.7
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.8e-97 360.9 394 54.6
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.8e-97 360.9 393 54.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 8.8e-97 358.6 392 54.6
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 9.7e-96 355.1 417 54.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.7e-95 353.2 577 45.2
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 3.7e-95 353.2 393 54.2
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.4e-94 350.5 580 46.4
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 3.1e-94 350.1 503 48.1
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 5.3e-94 349.4 314 61.5
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 5.3e-94 349.4 605 42.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 9.1e-94 348.6 386 53.9
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 1.2e-93 348.2 506 45.8
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 6.3e-87 325.9 441 48.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 8.2e-87 325.5 586 41.1
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 5.3e-86 322.8 533 43.7
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 7.0e-86 322.4 564 41.7
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 4.5e-85 319.7 498 45.6
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.0e-84 318.5 408 48.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.6e-82 311.2 454 45.2
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 8.0e-82 308.9 439 47.4
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.3e-81 307.4 389 50.1
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.2e-80 305.1 602 39.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.2e-79 300.8 569 39.9
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.0e-52 212.2 141 71.6
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.8e-50 204.1 253 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 2.0e-48 198.0 532 33.8
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.4e-48 197.2 132 71.2
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 7.8e-45 186.0 500 34.2
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 9.5e-43 179.1 598 32.1
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 8.1e-42 176.0 266 45.9
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.2e-40 172.2 304 39.1
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.5e-37 160.6 194 46.9
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-36 157.1 108 71.3
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 3.3e-35 154.1 337 37.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 1.9e-27 128.3 195 42.1
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.9e-27 128.3 195 42.1
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 4.3e-27 127.1 115 56.5
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.2e-26 125.6 237 41.8
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.1e-25 122.5 103 57.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.1e-25 122.5 103 57.3
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 3.4e-24 117.5 350 33.1
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 9.9e-24 115.9 195 40.0
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 3.5e-21 107.5 171 47.4
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 8.1e-18 96.3 148 49.3
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 5.3e-17 93.6 118 44.1
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.5e-16 90.5 62 69.4
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 1.0e-12 79.3 320 28.8
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 7.4e-11 73.2 193 30.1
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 1.4e-06 58.9 207 26.1
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 1.9e-06 58.5 216 29.6
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 1.9e-06 58.5 189 28.6
Rhsim03G0063700 Rhododendron simsii HOM05D000142 ORTHO05D007638 3.2e-06 57.8 227 21.6
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 4.2e-06 57.4 211 26.5
SEGI_39288 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 5.5e-06 57.0 214 25.2
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 7.1e-06 56.6 201 25.4
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 7.1e-06 56.6 224 25.9
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 7.1e-06 56.6 215 25.6
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 7.1e-06 56.6 207 25.6


User provided reference genes

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