Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.4e-54 215.3 114 100.0
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 3.6e-50 201.4 114 93.9
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 4.7e-42 174.5 111 83.8
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 4.7e-42 174.5 108 86.1
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 2.3e-41 172.2 93 97.8
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 3.1e-41 171.8 111 82.0
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.5e-40 169.5 93 95.7
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 2.6e-40 168.7 103 86.4
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.9e-38 162.5 97 88.7
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.9e-31 138.7 104 72.1
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 5.4e-30 134.4 101 71.3
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 4.6e-29 131.3 91 75.8
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 1.7e-28 129.4 105 68.6
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 2.3e-28 129.0 106 66.0
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 3.9e-28 128.3 102 69.6
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 6.6e-28 127.5 112 67.9
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 8.6e-28 127.1 109 69.7
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 2.1e-26 122.5 93 71.0
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 1.8e-25 119.4 99 62.6
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 5.2e-25 117.9 93 71.0
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 5.2e-25 117.9 103 63.1
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 6.9e-25 117.5 100 63.0
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 3.4e-24 115.2 100 63.0
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 3.4e-24 115.2 92 65.2
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 7.6e-24 114.0 86 67.4
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 1.7e-23 112.8 91 68.1
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.9e-23 112.1 101 62.4
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 8.4e-23 110.5 83 68.7
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 7.1e-22 107.5 99 59.6
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 9.3e-22 107.1 102 57.8
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 9.3e-22 107.1 115 59.1
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 1.6e-21 106.3 102 61.8
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 2.1e-21 105.9 102 59.8
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.1e-21 105.9 102 59.8
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.1e-21 105.9 102 59.8
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 3.5e-21 105.1 97 58.8
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 4.6e-21 104.8 76 67.1
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.6e-21 104.8 102 58.8
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.0e-21 104.4 102 58.8
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.0e-21 104.4 102 58.8
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 6.0e-21 104.4 100 62.0
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 1.0e-20 103.6 100 55.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 1.3e-20 103.2 100 56.0
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 1.7e-20 102.8 101 59.4
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 3.9e-20 101.7 101 59.4
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 5.1e-20 101.3 92 57.6
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.1e-20 101.3 102 57.8
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 6.6e-20 100.9 105 57.1
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 8.7e-20 100.5 105 54.3
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.5e-19 99.8 109 55.0
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 1.9e-19 99.4 89 59.6
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 2.5e-19 99.0 89 59.6
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 3.3e-19 98.6 89 60.7
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 4.3e-19 98.2 92 58.7
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 4.3e-19 98.2 104 57.7
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 5.6e-19 97.8 86 59.3
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 7.3e-19 97.4 89 57.3
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 7.3e-19 97.4 83 62.7
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 7.3e-19 97.4 86 59.3
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 9.6e-19 97.1 100 52.0
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 9.6e-19 97.1 83 61.4
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 9.6e-19 97.1 83 61.4
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 9.6e-19 97.1 102 55.9
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 1.3e-18 96.7 86 58.1
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.3e-18 96.7 91 56.0
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.6e-18 96.3 85 58.8
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.1e-18 95.9 69 71.0
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.1e-18 95.9 95 52.6
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 2.8e-18 95.5 102 58.8
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 3.6e-18 95.1 101 54.5
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.8e-18 94.7 89 57.3
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 1.1e-17 93.6 107 47.7
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 1.1e-17 93.6 101 47.5
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 2.4e-17 92.4 101 53.5
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.4e-17 92.4 95 50.5
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 3.1e-17 92.0 106 54.7
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 5.3e-17 91.3 98 58.2
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 9.0e-17 90.5 77 61.0
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 1.2e-16 90.1 101 52.5
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 7.6e-16 87.4 85 61.2
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 9.9e-16 87.0 102 52.0
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 4.9e-15 84.7 102 51.0
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 6.4e-15 84.3 90 51.1
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 6.4e-15 84.3 90 51.1
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 6.4e-15 84.3 120 44.2
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 2.4e-14 82.4 66 63.6
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 7.1e-14 80.9 71 59.2
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 2.1e-13 79.3 94 54.3
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 2.1e-13 79.3 56 67.9
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 2.7e-13 79.0 123 43.9
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 3.5e-13 78.6 90 52.2
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.0e-12 77.0 83 56.6
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 1.3e-12 76.6 93 53.8
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 2.3e-12 75.9 93 50.5
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 1.1e-11 73.6 87 51.7
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 7.4e-11 70.9 100 47.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.1e-09 67.0 81 45.7
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 6.9e-09 64.3 101 43.6
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.5e-08 63.2 46 67.4
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.6e-08 62.4 46 65.2
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 8.4e-07 57.4 37 67.6


User provided reference genes

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