Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 5.7e-295 1016.9 540 100.0
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 2.6e-276 954.9 514 99.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.9e-234 815.8 489 90.0
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.6e-233 811.6 436 99.1
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.4e-230 800.8 518 85.1
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.4e-229 799.7 519 83.8
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.7e-211 739.6 415 94.5
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.3e-206 723.4 524 74.8
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 3.2e-205 718.8 492 77.2
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.2e-204 716.8 453 82.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.6e-204 716.5 443 85.3
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 2.3e-203 712.6 478 77.8
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 8.7e-203 710.7 530 74.7
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.5e-202 709.9 477 77.8
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.9e-202 709.5 477 77.8
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.5e-202 709.1 460 80.9
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 3.3e-202 708.8 445 82.7
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 4.3e-202 708.4 477 78.0
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 4.3e-202 708.4 547 72.8
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 9.6e-202 707.2 474 79.1
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.6e-201 706.4 445 82.2
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 6.2e-201 704.5 453 80.8
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 6.2e-201 704.5 470 78.3
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.4e-200 703.4 454 80.4
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.4e-200 703.4 478 76.6
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.1e-200 702.2 470 78.1
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 3.1e-200 702.2 470 78.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 3.1e-200 702.2 517 72.5
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.1e-200 702.2 516 73.4
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 5.3e-200 701.4 453 80.1
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 5.3e-200 701.4 449 81.5
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.0e-199 699.5 458 80.8
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 2.0e-199 699.5 460 79.1
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.6e-199 699.1 478 77.4
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 3.4e-199 698.7 461 80.3
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 4.5e-199 698.4 455 80.9
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 5.8e-199 698.0 449 80.6
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 9.9e-199 697.2 444 82.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.3e-198 696.8 453 80.6
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.7e-198 696.4 499 74.7
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 6.4e-198 694.5 449 80.4
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 8.4e-198 694.1 461 79.0
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.4e-197 693.3 482 76.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.4e-197 693.3 528 71.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.4e-197 693.3 524 72.3
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.4e-197 693.3 442 83.9
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.9e-197 693.0 447 80.3
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.9e-197 693.0 450 80.4
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.4e-197 692.6 440 81.1
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 3.2e-197 692.2 444 81.1
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 7.1e-197 691.0 479 77.9
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.6e-196 689.9 450 80.2
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 2.7e-196 689.1 531 71.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 4.6e-196 688.3 517 71.8
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 6.0e-196 688.0 486 75.5
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 6.0e-196 688.0 506 73.3
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 6.0e-196 688.0 458 78.8
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.3e-195 686.8 443 80.4
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.8e-195 686.4 448 80.6
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.8e-195 686.4 535 70.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.3e-195 686.0 446 79.8
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.0e-195 685.6 535 70.7
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 3.9e-195 685.3 456 78.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 8.7e-195 684.1 449 80.6
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.5e-194 683.3 497 73.2
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.9e-194 682.9 497 74.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.3e-194 681.8 551 68.4
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 5.6e-194 681.4 476 76.3
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 7.4e-194 681.0 534 70.0
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 9.6e-194 680.6 451 79.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.1e-193 679.5 444 80.0
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.1e-193 679.5 433 81.8
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.7e-193 678.7 450 79.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 3.7e-193 678.7 448 79.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 8.1e-193 677.6 531 70.4
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.4e-192 676.8 521 72.2
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.8e-192 676.4 518 72.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 5.3e-192 674.9 439 79.5
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 5.3e-192 674.9 439 79.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.0e-191 672.9 464 76.9
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.5e-191 671.8 516 72.3
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.7e-190 669.8 443 78.1
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.7e-190 669.8 532 69.0
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.8e-190 668.7 526 70.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 4.9e-190 668.3 446 79.1
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.4e-189 666.8 488 73.8
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 5.5e-189 664.8 449 76.8
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 9.3e-189 664.1 405 84.4
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.2e-188 663.7 538 68.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 6.0e-188 661.4 442 79.6
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 7.9e-188 661.0 434 78.8
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.8e-187 659.8 439 78.1
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 6.7e-187 657.9 431 78.9
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 8.7e-187 657.5 518 70.5
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 8.7e-187 657.5 445 78.4
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.5e-186 656.0 426 79.6
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.3e-186 655.2 444 77.3
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.4e-184 650.2 406 82.3
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 9.0e-184 647.5 456 74.6
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.5e-183 646.7 430 80.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 2.1e-180 636.3 421 78.1
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.0e-179 634.0 442 75.6
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.8e-179 633.3 434 76.3
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.2e-177 626.3 445 74.6
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 6.3e-177 624.8 451 73.4
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 7.6e-175 617.8 459 73.6
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.9e-173 613.2 446 73.8
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.9e-173 613.2 459 71.7
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.3e-171 606.3 503 69.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 6.9e-168 594.7 454 67.4
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 7.7e-167 591.3 448 70.8
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.2e-166 589.7 422 76.5
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 7.2e-165 584.7 454 71.4
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.8e-152 543.5 433 66.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.8e-152 543.5 433 66.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.0e-147 527.7 425 64.2
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.3e-142 510.8 430 62.3
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 4.7e-140 502.3 440 60.7
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.4e-136 490.0 376 73.4
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 2.9e-126 456.4 294 76.9
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.9e-125 453.8 380 66.6
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 5.2e-123 445.7 367 62.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-107 394.4 230 90.4
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.2e-100 371.3 431 48.7
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 9.9e-90 335.1 426 47.7
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.7e-86 322.0 298 61.7
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 5.6e-85 319.3 225 72.0
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.6e-79 301.2 447 40.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.5e-72 277.3 385 40.3
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 7.1e-72 275.8 169 88.2
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.8e-68 263.1 156 91.0
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.5e-66 258.1 294 51.7
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.3e-62 244.2 514 31.5
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 9.7e-61 238.8 418 35.9
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.0e-57 226.5 453 37.3
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 6.7e-54 216.1 162 69.1
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 8.2e-52 209.1 245 49.4
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.9e-41 174.1 126 66.7
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 7.2e-40 169.5 135 68.1
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 5.2e-30 136.7 169 50.3
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.2e-28 131.3 118 58.5
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.1e-27 127.1 86 72.1
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.3e-25 122.1 101 65.3
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.5e-24 117.9 97 70.1
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.2e-20 104.8 408 24.8
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.4e-13 80.9 417 24.9
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.9e-12 77.0 67 68.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.1e-11 75.9 221 28.5


User provided reference genes

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